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NC_050153.1__YP_009914595.1__H7U14_gp04__00004

Bact-Vir

NC_050153.1__YP_009914595.1__H7U14_gp04__00004

Identity

Accession:
NC_050153 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Punavirus› Escherichia_phage_vB_EcoM-Ro157c2YLVW

TaxID: 2178932

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-132
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.72 65.0 6.08e-01 97.7% 85.5%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.70 61.0 5.75e-01 93.1% 81.2%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.69 60.0 5.62e-01 92.3% 78.7%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.63 34.0 4.23e-01 90.0% 84.1%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 36.0 3.72e-01 89.2% 60.3%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 36.0 3.75e-01 89.2% 63.0%
1ywkC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.50e-01 85.4% 70.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 26.0 3.56e-01 70.0% 92.5%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 46.0 3.72e-01 95.4% 71.4%
4e2qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 3.56e-01 95.4% 66.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007792 10.12.1.115 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.92 88.0 8.73e-01 100.0% 95.6%
4004354 10.12.1.115 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.90 86.0 8.54e-01 100.0% 97.0%
4007473 10.12.1.115 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.86 81.0 8.04e-01 100.0% 97.0%
3979600 10.12.1.116 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30441 0.86 81.0 7.79e-01 100.0% 93.8%
4409346 10.12.1.64 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N 0.82 76.0 7.08e-01 99.2% 86.9%
3966549 10.12.1.64 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N 0.81 76.0 6.94e-01 100.0% 83.6%
4006496 10.12.1.116 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30441 0.81 76.0 7.57e-01 100.0% 98.5%
3387563 10.12.1.64 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N 0.78 72.0 6.41e-01 99.2% 78.9%
4041127 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.78 72.0 6.87e-01 100.0% 92.0%
3977554 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.77 73.0 7.08e-01 100.0% 96.4%
3981437 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.76 71.0 6.56e-01 100.0% 82.5%
3967885 10.12.1.81 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.74 67.0 5.94e-01 99.2% 84.9%
4324685 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.73 52.0 5.62e-01 94.6% 86.4%
3289990 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.73 56.0 5.45e-01 93.1% 73.1%
4981952 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 30.0 4.61e-01 83.8% 100.0%
4225307 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.71 61.0 5.66e-01 93.1% 78.2%
4514037 10.12.1.75 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.70 62.0 5.29e-01 96.2% 62.9%
4271412 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.70 62.0 5.71e-01 95.4% 80.0%
4032989 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.70 58.0 5.71e-01 93.8% 83.6%
3967079 10.12.1.75 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.69 61.0 5.19e-01 94.6% 60.0%
4215484 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 49.0 4.89e-01 89.2% 70.4%
3970143 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 53.0 5.20e-01 93.1% 75.0%
3943625 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.69 55.0 5.48e-01 92.3% 81.5%
4010514 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 63.0 5.69e-01 100.0% 83.4%
4393329 10.12.1.75 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.67 60.0 5.12e-01 96.2% 62.0%
3590244 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.67 58.0 5.33e-01 93.1% 72.4%
3945115 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.67 61.0 5.63e-01 98.5% 80.6%
3964888 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.67 59.0 4.99e-01 95.4% 100.0%
3288359 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.66 59.0 5.12e-01 96.2% 85.1%
3277945 10.12.1.75 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.66 58.0 5.00e-01 94.6% 61.5%
3163769 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.66 57.0 5.10e-01 93.1% 80.0%
3970322 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 60.0 5.52e-01 100.0% 84.2%
1030915 10.12.1.27 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.65 38.0 3.71e-01 89.2% 52.5%
3511214 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.65 56.0 5.38e-01 94.6% 82.7%
3979082 10.12.1.126 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF28724 0.65 55.0 4.75e-01 93.8% 70.5%
4200990 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 26.0 3.88e-01 85.4% 92.0%
3946257 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.64 57.0 5.04e-01 97.7% 82.6%
1877809 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 36.0 3.40e-01 89.2% 45.0%
3969488 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 51.0 4.68e-01 91.5% 89.1%
3923675 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 31.0 4.21e-01 72.3% 100.0%
3505111 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.58 28.0 3.35e-01 73.1% 65.6%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 28.0 3.95e-01 84.6% 100.0%
3530247 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 28.0 3.80e-01 83.8% 96.9%
3773104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 28.0 2.79e-01 94.6% 45.9%
4270486 10.12.1.22 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.53 44.0 3.49e-01 89.2% 69.3%
D2 high residues 136-239
PDB
Domain cluster: rep: CAKLQF020000010.1__CAH1085041.1__SAMEA5780031_02143__00088__D216-325
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12833.14 best HTH_18 52.5 7.00e-14 75.0% 96.2%
PF00165.30 HTH_AraC 39.2 7.90e-10 38.5% 83.3%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.95 88.0 8.89e-01 96.2% 97.1%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.94 87.0 8.89e-01 96.2% 100.0%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.92 88.0 8.52e-01 100.0% 93.8%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.89 84.0 8.32e-01 100.0% 95.4%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 82.0 8.02e-01 100.0% 96.4%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 79.0 7.81e-01 98.1% 98.1%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 73.0 7.27e-01 98.1% 99.1%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.69 41.0 4.34e-01 85.6% 64.9%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 35.0 4.80e-01 81.7% 100.0%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 35.0 4.19e-01 75.0% 77.3%
2qibB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 57.0 4.59e-01 99.0% 58.7%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.64 55.0 4.50e-01 95.2% 87.1%
2d6yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 54.0 4.50e-01 98.1% 65.6%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 53.0 4.33e-01 99.0% 61.6%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.61 42.0 4.21e-01 94.2% 69.2%
3on4D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 52.0 4.32e-01 96.2% 73.0%
3he0B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 52.0 4.39e-01 98.1% 65.7%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 51.0 4.29e-01 98.1% 68.1%
3g7rA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 50.0 4.21e-01 98.1% 70.9%
5d18A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 50.0 4.12e-01 100.0% 65.3%
2g7gA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 51.0 4.12e-01 98.1% 93.9%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.57 28.0 3.13e-01 73.1% 57.1%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 35.0 3.73e-01 93.3% 69.1%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.55 43.0 3.73e-01 83.7% 96.3%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 48.0 4.78e-01 100.0% 100.0%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 36.0 3.19e-01 73.1% 48.1%
2zj2A04 1.10.3380.20 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.52 42.0 3.59e-01 86.5% 67.1%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 44.0 3.02e-01 96.2% 80.5%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 39.0 3.71e-01 84.6% 70.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010677 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.99 91.0 9.35e-01 94.2% 99.0%
None — 0.97 90.0 9.23e-01 96.2% 100.0%
3964790 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.96 88.0 8.78e-01 94.2% 94.3%
3972910 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.95 58.0 7.50e-01 94.2% 100.0%
3288934 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.93 48.0 6.45e-01 97.1% 90.0%
3966470 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 88.0 7.92e-01 100.0% 77.8%
3944639 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 86.0 8.62e-01 97.1% 99.0%
4004617 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 88.0 8.44e-01 100.0% 94.8%
4541688 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 86.0 8.35e-01 99.0% 93.0%
3287303 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 85.0 8.48e-01 97.1% 100.0%
4497103 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 84.0 8.37e-01 96.2% 99.0%
3972412 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 81.0 7.96e-01 93.3% 94.5%
3968456 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 86.0 8.53e-01 100.0% 97.2%
3289875 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 71.0 7.64e-01 81.7% 96.7%
3972891 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 82.0 8.41e-01 95.2% 99.0%
3956897 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 86.0 8.58e-01 100.0% 100.0%
None — 0.89 80.0 8.23e-01 94.2% 100.0%
4007697 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 81.0 7.83e-01 96.2% 92.2%
3964894 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 78.0 7.98e-01 92.3% 99.0%
3976262 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 83.0 8.04e-01 100.0% 93.9%
None — 0.89 78.0 8.02e-01 93.3% 100.0%
3283959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 71.0 7.57e-01 83.7% 97.8%
3949057 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 80.0 8.00e-01 96.2% 100.0%
4193366 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 81.0 7.91e-01 97.1% 92.7%
4211867 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 81.0 7.96e-01 100.0% 96.4%
4123831 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 77.0 7.36e-01 95.2% 86.7%
4009674 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 81.0 7.96e-01 100.0% 95.5%
3976759 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.86 75.0 7.68e-01 92.3% 100.0%
4374806 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.86 81.0 6.50e-01 99.0% 57.3%
3973662 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.86 76.0 7.74e-01 93.3% 99.0%
4030908 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.86 53.0 6.27e-01 99.0% 86.7%
3513766 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.86 81.0 7.53e-01 100.0% 84.8%
4590066 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.86 80.0 7.82e-01 100.0% 96.5%
4539758 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.84 75.0 7.12e-01 95.2% 87.5%
3945505 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.84 76.0 7.24e-01 96.2% 87.4%
3975658 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.82 66.0 7.02e-01 83.7% 96.7%