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NC_050154.1__YP_009914794.1__H7U15_gp010__00117

Bact-Vir

NC_050154.1__YP_009914794.1__H7U15_gp010__00117

Identity

Accession:
NC_050154 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_D6

TaxID: 2014434

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-92
PDB
Domain cluster: rep: NC_005856.1__YP_006473.1__P1_gp004__00003__D2-102
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.70 54.0 3.63e-01 82.0% 28.5%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.69 38.0 3.81e-01 95.5% 52.1%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 52.0 4.12e-01 79.8% 47.5%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.69 54.0 3.73e-01 84.3% 35.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 43.0 3.47e-01 95.5% 36.9%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.66 57.0 4.96e-01 93.3% 81.3%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 53.0 3.58e-01 86.5% 31.6%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 51.0 3.68e-01 84.3% 34.7%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.66 43.0 3.55e-01 95.5% 39.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 41.0 4.91e-01 74.2% 91.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 45.0 3.68e-01 73.0% 83.7%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 50.0 4.10e-01 83.1% 65.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 50.0 3.84e-01 83.1% 43.2%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.63 56.0 4.67e-01 98.9% 92.9%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 49.0 3.30e-01 83.1% 23.5%
4lb8A02 2.60.40.3900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 45.0 3.93e-01 77.5% 80.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.62 49.0 3.42e-01 86.5% 26.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 40.0 3.25e-01 95.5% 36.4%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 40.0 2.77e-01 79.8% 20.4%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 51.0 4.37e-01 93.3% 65.7%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 54.0 4.36e-01 100.0% 64.5%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.58 50.0 3.39e-01 100.0% 24.3%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 39.0 3.28e-01 77.5% 40.9%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.58 48.0 3.99e-01 88.8% 62.7%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.58 41.0 3.32e-01 74.2% 40.9%
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.57 44.0 4.13e-01 82.0% 85.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 47.0 4.01e-01 87.6% 83.6%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 48.0 3.86e-01 92.1% 76.5%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 49.0 4.17e-01 98.9% 67.1%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 48.0 3.58e-01 100.0% 56.9%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.55 42.0 3.83e-01 83.1% 69.4%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 49.0 3.98e-01 100.0% 64.5%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.53 38.0 4.06e-01 79.8% 88.0%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.49e-01 100.0% 100.0%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.52 42.0 3.33e-01 96.6% 43.7%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 36.0 3.55e-01 92.1% 67.7%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.97e-01 76.4% 100.0%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 39.0 2.92e-01 83.1% 79.0%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.50 46.0 3.02e-01 100.0% 51.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781730 5.1.11.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.75 58.0 3.76e-01 82.0% 23.5%
4929596 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 57.0 3.56e-01 83.1% 20.2%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 57.0 3.70e-01 85.4% 22.8%
3327098 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.70 54.0 3.65e-01 82.0% 28.1%
3272624 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.70 50.0 4.41e-01 75.3% 66.2%
5059920 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.69 54.0 5.40e-01 83.1% 87.8%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.68 52.0 5.45e-01 79.8% 95.0%
3785654 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.68 55.0 3.36e-01 86.5% 18.3%
3676609 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.68 52.0 3.59e-01 82.0% 34.1%
None — 0.67 54.0 3.83e-01 86.5% 40.4%
4265925 3518.1.2.0 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex 0.67 42.0 3.51e-01 93.3% 38.3%
4027070 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 51.0 3.87e-01 80.9% 39.5%
3783250 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.67 54.0 3.64e-01 87.6% 36.1%
3483808 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.67 43.0 4.86e-01 73.0% 84.3%
3603190 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 52.0 3.08e-01 83.1% 12.6%
3206926 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 46.0 3.25e-01 77.5% 23.2%
4022704 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.66 52.0 3.44e-01 85.4% 36.5%
4389184 11.1.1.1065 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25971 0.66 51.0 4.84e-01 82.0% 83.8%
3597662 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 53.0 3.42e-01 86.5% 21.7%
5055395 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.66 53.0 3.50e-01 86.5% 22.2%
3642733 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.66 52.0 3.60e-01 86.5% 29.5%
3844416 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.65 50.0 3.26e-01 82.0% 20.8%
3212364 5.1.5.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.65 52.0 3.30e-01 86.5% 30.7%
3499652 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 54.0 3.82e-01 92.1% 46.1%
5025094 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 52.0 4.81e-01 87.6% 69.6%
3938164 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 44.0 5.14e-01 73.0% 96.9%
2320976 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.64 50.0 3.83e-01 83.1% 43.0%
3486624 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.64 54.0 3.48e-01 91.0% 22.6%
3644524 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.64 49.0 4.17e-01 80.9% 75.7%
3216472 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.64 50.0 4.47e-01 84.3% 85.6%
5056836 5.1.3.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.63 51.0 3.41e-01 86.5% 25.0%
3938904 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.63 41.0 3.51e-01 100.0% 43.7%
4028363 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 42.0 4.18e-01 98.9% 67.8%
4633341 5.1.4.103 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DCAF17 0.62 49.0 3.07e-01 86.5% 17.4%
3312366 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.62 47.0 3.98e-01 80.9% 75.2%
4346133 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 40.0 3.37e-01 100.0% 41.0%
3214409 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.62 52.0 4.58e-01 92.1% 84.6%
5040847 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 48.0 3.36e-01 86.5% 28.8%
3816256 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.60 48.0 4.17e-01 85.4% 80.0%
3795920 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.59 50.0 4.83e-01 91.0% 92.0%
3179848 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.59 44.0 3.84e-01 80.9% 57.6%
3483806 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.58 48.0 3.98e-01 86.5% 86.7%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.58 48.0 4.05e-01 87.6% 75.0%
1140350 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.58 48.0 3.94e-01 88.8% 60.6%
3290942 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.08e-01 80.9% 89.5%
4076042 5.1.5.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 0.57 48.0 3.10e-01 96.6% 19.3%
3993370 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.56 46.0 3.23e-01 91.0% 31.4%
4457711 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 43.0 3.33e-01 82.0% 85.6%
3866695 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 47.0 3.86e-01 91.0% 82.6%
3985863 219.1.1.109 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.55 47.0 3.55e-01 92.1% 61.5%
3983708 219.1.1.109 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.54 47.0 3.60e-01 92.1% 64.6%
3241305 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.54 46.0 3.87e-01 89.9% 82.9%
3929256 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.54 45.0 3.84e-01 89.9% 77.9%
3746407 5.1.5.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 0.53 45.0 2.98e-01 100.0% 25.6%
3890928 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 47.0 3.67e-01 94.4% 77.8%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.50 38.0 3.80e-01 79.8% 88.9%