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NC_051587.1__YP_009950082.1__I5G64_gp30__00030

Bact-Vir

NC_051587.1__YP_009950082.1__I5G64_gp30__00030

Identity

Accession:
NC_051587 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acadianvirus› Mycobacterium_phage_Serendipitous

TaxID: 2301619

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-287
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 23.0 3.04e-01 96.7% 68.5%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 24.0 3.04e-01 97.1% 70.7%
D2 medium residues 288-464
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 26.0 1.30e-05 62.7% 46.9%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 27.0 3.79e-01 100.0% 85.2%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 31.0 3.85e-01 98.9% 84.4%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 26.0 3.18e-01 100.0% 64.9%
1ig3A01 2.60.120.320 Mainly Beta › Sandwich › Jelly Rolls › Thiamin pyrophosphokinase, thiamin-binding domain 0.56 28.0 3.75e-01 99.4% 87.6%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 28.0 3.51e-01 91.5% 76.6%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 27.0 3.02e-01 100.0% 56.9%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 25.0 3.44e-01 98.3% 85.7%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 25.0 3.36e-01 98.3% 80.5%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 28.0 3.30e-01 100.0% 68.0%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 27.0 3.26e-01 99.4% 70.4%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.54 29.0 2.69e-01 100.0% 42.3%
7wsoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 24.0 3.23e-01 94.4% 83.5%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.52 26.0 3.54e-01 100.0% 92.5%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.51 30.0 3.56e-01 100.0% 86.3%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 31.0 3.54e-01 99.4% 80.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929792 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 29.0 3.76e-01 100.0% 69.0%
4029335 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.67 31.0 4.42e-01 100.0% 98.7%
4028543 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.65 29.0 4.18e-01 99.4% 94.7%
2883189 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.64 31.0 4.34e-01 100.0% 100.0%
1276801 10.11.1.1 ↗ beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain › TPK_B1_binding 0.63 29.0 4.21e-01 100.0% 92.9%
4928383 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 32.0 4.47e-01 98.9% 98.9%
4940074 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 28.0 3.68e-01 94.4% 77.9%
370857 10.11.1.1 ↗ beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain › TPK_B1_binding 0.61 28.0 4.16e-01 100.0% 98.8%
5084091 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.59 28.0 3.70e-01 100.0% 82.1%
5010649 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 30.0 4.22e-01 98.3% 100.0%
5045052 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 26.0 3.28e-01 100.0% 66.4%
3645910 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.57 39.0 4.08e-01 100.0% 73.8%
3821106 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 32.0 3.29e-01 96.6% 55.9%
381239 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.57 34.0 3.23e-01 100.0% 50.2%
223801 10.2.1.67 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Spike_JR1 0.57 28.0 3.83e-01 98.9% 94.2%
3228358 10.32.1.258 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_IRG7_N 0.57 31.0 4.20e-01 98.3% 100.0%
3649432 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 30.0 3.12e-01 93.8% 52.1%
5055086 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 30.0 4.14e-01 98.9% 100.0%
4982229 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 33.0 4.18e-01 99.4% 100.0%
3935807 10.32.1.258 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_IRG7_N 0.55 28.0 3.96e-01 94.9% 100.0%
3832008 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.54 31.0 2.85e-01 97.7% 41.9%
3243337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 30.0 3.71e-01 96.0% 85.2%
4959959 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 30.0 3.96e-01 97.7% 99.0%
4961996 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.52 28.0 3.29e-01 94.4% 72.0%
3896773 10.32.1.234 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd 0.51 34.0 3.83e-01 100.0% 85.0%
4244782 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.51 30.0 3.47e-01 97.7% 79.2%
4971701 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 29.0 3.67e-01 100.0% 97.0%
5043348 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 30.0 3.13e-01 99.4% 60.6%
4211051 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.51 30.0 3.78e-01 99.4% 100.0%
5040182 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 31.0 3.83e-01 99.4% 100.0%