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NC_051587.1__YP_009950127.1__I5G64_gp75__00075

Bact-Vir

NC_051587.1__YP_009950127.1__I5G64_gp75__00075

Identity

Accession:
NC_051587 ↗
Kingdom:
phage

Quality

67.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acadianvirus› Mycobacterium_phage_Serendipitous

TaxID: 2301619

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-68
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 44.0 4.64e-01 96.8% 78.9%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 42.0 3.98e-01 79.4% 56.6%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 37.0 3.73e-01 74.6% 69.8%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 39.0 2.44e-01 74.6% 20.1%
2r7dA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 32.0 3.29e-01 73.0% 60.0%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.26e-01 76.2% 46.4%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.51e-01 73.0% 63.3%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 37.0 2.38e-01 71.4% 98.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.50e-01 98.4% 53.1%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 43.0 3.45e-01 100.0% 45.5%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 36.0 2.29e-01 73.0% 19.3%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.34e-01 73.0% 69.5%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.17e-01 73.0% 68.1%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 36.0 2.29e-01 74.6% 91.0%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.71e-01 93.7% 87.9%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.49e-01 73.0% 70.8%
6we5A00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.50 38.0 2.84e-01 90.5% 83.5%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.50 39.0 3.48e-01 90.5% 64.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008357 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 45.0 5.63e-01 82.5% 97.1%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 49.0 4.89e-01 100.0% 60.0%
3692487 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.73 46.0 3.94e-01 93.7% 40.0%
3608274 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 46.0 4.89e-01 79.4% 78.2%
3554759 376.1.3.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.68 44.0 4.56e-01 79.4% 70.0%
3910122 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.66 43.0 4.17e-01 77.8% 60.0%
3472433 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 42.0 4.63e-01 100.0% 82.0%
3718357 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 42.0 4.78e-01 79.4% 91.1%
3342185 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 45.0 3.91e-01 77.8% 47.4%
3876888 376.1.1.102 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 0.65 46.0 3.78e-01 74.6% 45.2%
4015661 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 47.0 3.95e-01 82.5% 45.7%
3253491 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 35.0 3.54e-01 76.2% 58.5%
4947996 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 34.0 3.58e-01 74.6% 72.7%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.53 43.0 3.87e-01 93.7% 62.1%
3592068 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.53 43.0 4.50e-01 96.8% 100.0%
3442276 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.03e-01 74.6% 78.3%
3253321 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.61e-01 73.0% 84.6%
4950397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 33.0 3.54e-01 74.6% 76.4%
3175591 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.51 35.0 3.02e-01 74.6% 72.2%
5080835 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 32.0 3.42e-01 74.6% 74.5%
4932460 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.50 34.0 3.44e-01 73.0% 69.8%