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NC_051590.1__YP_009950342.1__I5G69_gp01__00001
Bact-VirNC_051590.1__YP_009950342.1__I5G69_gp01__00001
Identity
- Accession:
- NC_051590 ↗
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Taxonomy
TaxID: 2708631
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-42
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24182.2 best | G1RFP | 45.7 | 5.50e-12 | 85.0% | 97.1% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.90 | 81.0 | 6.29e-01 | 100.0% | 51.2% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.85 | 73.0 | 4.86e-01 | 100.0% | 26.5% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.80 | 68.0 | 4.93e-01 | 100.0% | 43.9% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.77 | 65.0 | 5.22e-01 | 100.0% | 48.2% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.77 | 52.0 | 3.51e-01 | 77.5% | 20.6% |
| 6hrdA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.76 | 64.0 | 4.10e-01 | 97.5% | 19.9% |
| 1a5tA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.74 | 62.0 | 4.49e-01 | 97.5% | 36.2% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.73 | 62.0 | 5.66e-01 | 97.5% | 70.9% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.71 | 63.0 | 5.24e-01 | 100.0% | 88.2% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.70 | 61.0 | 4.28e-01 | 100.0% | 32.6% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 56.0 | 3.68e-01 | 97.5% | 20.7% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 61.0 | 3.75e-01 | 97.5% | 17.5% |
| 1vbgA04 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.68 | 52.0 | 4.51e-01 | 85.0% | 57.1% |
| 1xqiA00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.66 | 52.0 | 3.36e-01 | 85.0% | 18.7% |
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 44.0 | 4.40e-01 | 85.0% | 73.8% |
| 4n1aB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 53.0 | 3.13e-01 | 97.5% | 35.4% |
| 2fd5A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 54.0 | 5.10e-01 | 100.0% | 85.4% |
| 2o01300 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.59 | 41.0 | 3.06e-01 | 75.0% | 26.1% |
| 3cnhB02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 43.0 | 3.86e-01 | 87.5% | 52.9% |
| 3amjB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 45.0 | 3.02e-01 | 100.0% | 69.9% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 41.0 | 3.72e-01 | 95.0% | 55.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2429105 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.85 | 71.0 | 5.93e-01 | 100.0% | 54.1% |
| 3964187 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.82 | 71.0 | 5.72e-01 | 100.0% | 51.2% |
| 3166260 | 1.1.7.123 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25885 | 0.82 | 71.0 | 4.97e-01 | 100.0% | 31.5% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.82 | 68.0 | 4.35e-01 | 100.0% | 20.5% |
| 3987006 | 5086.1.1.93 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_EMRA | 0.81 | 70.0 | 4.82e-01 | 100.0% | 29.3% |
| 3970512 | 5086.1.1.189 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB | 0.81 | 70.0 | 5.75e-01 | 100.0% | 54.7% |
| 3974231 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.81 | 69.0 | 5.82e-01 | 100.0% | 98.6% |
| 4883934 | 2003.1.1.155 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N, F420_oxidored | 0.80 | 67.0 | 4.29e-01 | 97.5% | 20.9% |
| 4258322 | 5086.1.1.189 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB | 0.79 | 69.0 | 5.80e-01 | 100.0% | 58.6% |
| 4362754 | 5086.1.1.86 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG | 0.78 | 66.0 | 4.79e-01 | 100.0% | 34.2% |
| 3791357 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.78 | 63.0 | 4.29e-01 | 100.0% | 28.5% |
| 5040510 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.78 | 69.0 | 4.20e-01 | 100.0% | 17.1% |
| 5076243 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.77 | 68.0 | 5.20e-01 | 100.0% | 45.6% |
| 4878100 | 616.1.1.2 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS | 0.76 | 63.0 | 6.24e-01 | 100.0% | 100.0% |
| 4015147 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.75 | 63.0 | 3.52e-01 | 100.0% | 8.2% |
| 4977830 | 129.1.1.3 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › UDPG_MGDP_dh | 0.72 | 58.0 | 4.75e-01 | 95.0% | 47.5% |
| 4009505 | 7079.1.1.1 ↗ | a+b complex topology › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Caudo_TAP | 0.69 | 54.0 | 4.75e-01 | 100.0% | 71.4% |
| 4007897 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.69 | 53.0 | 4.74e-01 | 100.0% | 71.4% |
| 3975852 | 192.8.1.466 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Caudo_TAP | 0.68 | 53.0 | 4.79e-01 | 100.0% | 76.9% |
| 3565003 | 165.1.1.3 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 | 0.67 | 52.0 | 5.49e-01 | 95.0% | 94.3% |
| 3858340 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.66 | 50.0 | 3.68e-01 | 100.0% | 50.7% |