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NC_051595.1__YP_009950881.1__I5G74_gp22__00074

Bact-Vir

NC_051595.1__YP_009950881.1__I5G74_gp22__00074

Identity

Accession:
NC_051595 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kratiovirus› Mycobacterium_phage_Paola

TaxID: 2094139

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-36
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k1rA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.67 51.0 3.60e-01 93.3% 81.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 50.0 3.61e-01 96.7% 31.2%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 52.0 3.83e-01 100.0% 39.4%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 47.0 3.45e-01 96.7% 32.1%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 43.0 2.72e-01 90.0% 52.4%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 49.0 3.20e-01 100.0% 62.7%
3o8lA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 43.0 2.71e-01 90.0% 51.4%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.59 45.0 3.20e-01 83.3% 49.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.12e-01 100.0% 32.3%
2ggoA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.59 43.0 2.78e-01 93.3% 22.0%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.59 39.0 2.93e-01 100.0% 23.7%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 42.0 2.70e-01 93.3% 47.8%
3e59B02 3.30.60.140 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 40.0 3.88e-01 76.7% 57.9%
3o8oA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 38.0 2.48e-01 90.0% 49.8%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.56 40.0 3.17e-01 100.0% 60.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 38.0 2.77e-01 96.7% 42.9%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 41.0 2.77e-01 96.7% 24.7%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 37.0 2.92e-01 100.0% 49.5%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.55 38.0 2.72e-01 86.7% 22.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 38.0 2.36e-01 80.0% 10.0%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 39.0 2.80e-01 96.7% 37.2%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 2.69e-01 83.3% 23.3%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 39.0 3.43e-01 90.0% 96.4%
1b5fB00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 39.0 2.94e-01 80.0% 42.5%
2h4oA00 6.20.120.10 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.41e-01 100.0% 64.5%
7xb6B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 38.0 2.51e-01 90.0% 94.1%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.53 39.0 3.48e-01 100.0% 70.2%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 2.62e-01 100.0% 45.3%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.47e-01 80.0% 60.5%
1vw4H00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.52 38.0 2.53e-01 83.3% 48.0%
3ce9A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.42e-01 80.0% 47.7%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.25e-01 80.0% 13.5%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.11e-01 100.0% 46.2%
2r8rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.21e-01 76.7% 19.6%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 2.98e-01 70.0% 28.0%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 34.0 2.50e-01 100.0% 69.3%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 34.0 3.42e-01 93.3% 73.5%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 2.75e-01 73.3% 24.4%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 37.0 2.53e-01 100.0% 40.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222502 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.79 62.0 5.12e-01 96.7% 78.3%
3265214 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 54.0 3.71e-01 83.3% 24.3%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 60.0 4.03e-01 96.7% 25.8%
4259368 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 58.0 3.89e-01 93.3% 25.0%
4271212 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 58.0 3.87e-01 96.7% 27.6%
3690513 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 53.0 3.59e-01 96.7% 25.6%
5061096 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 48.0 3.76e-01 86.7% 31.2%
4112182 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 53.0 3.62e-01 96.7% 28.8%
60305 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 50.0 3.63e-01 96.7% 32.1%
5035493 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 50.0 3.62e-01 96.7% 32.4%
4181293 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 51.0 3.62e-01 96.7% 30.9%
3828336 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 49.0 3.50e-01 96.7% 29.8%
3493963 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 47.0 3.46e-01 93.3% 29.0%
5029669 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 48.0 3.39e-01 96.7% 27.5%
4119940 1075.1.1.65 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF2705 0.65 45.0 2.73e-01 83.3% 44.0%
4995244 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 51.0 3.59e-01 96.7% 30.0%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 49.0 3.54e-01 96.7% 32.4%
3234976 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 49.0 3.47e-01 96.7% 30.9%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 46.0 3.30e-01 93.3% 26.1%
4025452 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 49.0 3.49e-01 96.7% 29.6%
3603208 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 48.0 3.88e-01 93.3% 44.3%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 46.0 3.30e-01 93.3% 27.0%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 46.0 3.28e-01 96.7% 29.6%
3781291 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 49.0 3.56e-01 96.7% 38.0%
3594965 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 49.0 3.30e-01 96.7% 24.3%
4210625 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.61 46.0 2.59e-01 100.0% 25.5%
4026547 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 44.0 2.64e-01 100.0% 26.7%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 44.0 3.20e-01 96.7% 30.9%
3786162 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 45.0 3.42e-01 96.7% 38.9%
3628456 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 40.0 2.91e-01 96.7% 28.1%
5051446 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 41.0 2.79e-01 83.3% 20.0%
4031433 246.2.1.22 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos, FBPase_2 0.59 41.0 2.31e-01 73.3% 9.7%
3935332 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 46.0 3.15e-01 96.7% 26.2%
4988012 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.58 40.0 2.62e-01 100.0% 22.0%
3254382 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 41.0 3.08e-01 100.0% 80.9%
3579472 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 42.0 2.95e-01 93.3% 23.1%
3808578 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 41.0 3.42e-01 96.7% 45.9%
5044090 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 40.0 2.66e-01 83.3% 16.2%
3525928 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 41.0 2.83e-01 90.0% 33.6%
1678740 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.56 40.0 3.27e-01 96.7% 41.0%
4159776 3294.1.1.1 ↗ alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H 0.55 39.0 2.35e-01 76.7% 9.4%
4122525 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 42.0 3.44e-01 100.0% 41.3%
3228583 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 41.0 3.01e-01 96.7% 29.6%
5024500 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.55 43.0 3.07e-01 83.3% 35.2%
5031247 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.55 39.0 2.56e-01 83.3% 15.9%
3482328 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 39.0 3.03e-01 100.0% 35.2%
3470265 101.1.9.114 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Prefoldin_2 0.54 40.0 3.46e-01 96.7% 52.3%
4937431 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 41.0 2.67e-01 80.0% 15.2%
4856700 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.54 37.0 2.56e-01 100.0% 19.7%
4931058 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 40.0 2.65e-01 83.3% 15.9%
5045441 192.2.1.88 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N 0.54 38.0 2.57e-01 83.3% 15.9%
3711252 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.53 38.0 2.69e-01 100.0% 32.1%
3254236 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 35.0 2.82e-01 100.0% 38.1%
4968841 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 38.0 2.25e-01 80.0% 11.7%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.53 35.0 3.46e-01 100.0% 60.0%
3176885 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.53 38.0 2.10e-01 93.3% 29.8%
4057956 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.53 37.0 2.29e-01 76.7% 10.0%
5005743 2484.1.1.87 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C 0.52 37.0 2.43e-01 86.7% 15.1%
3623948 389.1.1.111 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TNFR_nem 0.52 37.0 3.53e-01 73.3% 55.0%
3937387 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 36.0 2.63e-01 83.3% 22.5%
3506058 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 37.0 2.84e-01 96.7% 43.0%
4935088 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.51 39.0 2.75e-01 80.0% 19.2%
3214720 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 37.0 2.98e-01 100.0% 38.9%
3273509 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 34.0 2.55e-01 86.7% 66.7%
4967607 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 38.0 2.58e-01 83.3% 16.8%