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NC_051597.1__YP_009951045.1__I5G76_gp45__00055

Bact-Vir

NC_051597.1__YP_009951045.1__I5G76_gp45__00055

Identity

Accession:
NC_051597 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kratiovirus› Mycobacterium_phage_Thyatira

TaxID: 2283261

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-88
PDB
Domain cluster: rep: OQ417970.1__WJJ56205.1__PROPHIT462_11__00011__D2-94
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.57 41.0 3.10e-01 74.7% 36.5%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 38.0 2.66e-01 72.3% 20.8%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 31.0 3.22e-01 75.9% 56.6%
2nn6E00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 48.0 3.43e-01 100.0% 31.3%
1cm0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 3.17e-01 75.9% 37.7%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 38.0 3.08e-01 72.3% 42.7%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 47.0 3.64e-01 97.6% 51.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.55 40.0 3.63e-01 81.9% 82.4%
2peeB02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 37.0 3.23e-01 72.3% 91.6%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 45.0 3.43e-01 96.4% 52.0%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.52 36.0 3.81e-01 84.3% 81.3%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 37.0 2.74e-01 74.7% 41.9%
3efoB04 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 38.0 2.80e-01 80.7% 60.4%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 37.0 2.75e-01 79.5% 28.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 38.0 3.61e-01 81.9% 97.1%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 38.0 2.53e-01 79.5% 23.1%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 34.0 3.34e-01 72.3% 65.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960621 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.69 49.0 3.02e-01 74.7% 75.4%
3506749 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.60 53.0 4.30e-01 100.0% 88.5%
3208775 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.57 39.0 2.94e-01 72.3% 100.0%
5045714 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 40.0 3.19e-01 74.7% 38.8%
4936480 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 40.0 3.23e-01 74.7% 37.1%
2841932 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 44.0 3.91e-01 85.5% 86.5%
3990213 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 42.0 3.96e-01 78.3% 77.0%
3645259 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 46.0 4.17e-01 88.0% 99.1%
3619358 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.56 48.0 3.16e-01 95.2% 53.8%
5057541 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.55 40.0 3.28e-01 77.1% 76.4%
3933688 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 48.0 3.13e-01 95.2% 53.0%
5030187 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.55 37.0 3.88e-01 71.1% 100.0%
3062973 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.55 36.0 2.47e-01 78.3% 17.4%
5066271 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 39.0 3.14e-01 80.7% 38.2%
3741268 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 49.0 3.81e-01 100.0% 81.7%
3389668 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.54 41.0 3.89e-01 81.9% 77.0%
3518991 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.53 38.0 3.96e-01 73.5% 100.0%
3770806 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.53 42.0 3.76e-01 85.5% 86.4%
4247532 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.53 38.0 3.16e-01 75.9% 82.6%
3212521 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 46.0 3.06e-01 95.2% 49.4%
3415024 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 46.0 3.14e-01 98.8% 46.9%
3234312 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.53 46.0 3.07e-01 100.0% 23.8%
4363805 292.2.1.9 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.53 41.0 4.04e-01 85.5% 90.0%
4969653 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 38.0 3.05e-01 75.9% 79.4%
3476015 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.52 37.0 3.56e-01 73.5% 75.8%
4509605 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 38.0 3.20e-01 77.1% 76.4%
3990858 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.52 39.0 2.73e-01 81.9% 36.0%
4054500 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.51 44.0 2.74e-01 100.0% 31.7%
3773860 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 46.0 2.72e-01 100.0% 68.8%
3627968 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.51 38.0 2.85e-01 83.1% 47.0%
5001282 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 36.0 2.98e-01 73.5% 55.9%
4032161 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.50 27.0 3.05e-01 71.1% 67.2%