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NC_051598.1__YP_009951102.1__I5G77_gp16__00016

Bact-Vir

NC_051598.1__YP_009951102.1__I5G77_gp16__00016

Identity

Accession:
NC_051598 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-80
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 3.18e-01 87.3% 89.1%
1w1oA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.57 48.0 3.26e-01 100.0% 73.2%
6kd0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 41.0 2.67e-01 92.7% 72.8%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.69e-01 96.4% 77.9%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 30.0 2.50e-01 76.4% 27.7%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 41.0 2.49e-01 89.1% 78.4%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 45.0 2.71e-01 100.0% 42.0%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.51 38.0 3.20e-01 83.6% 51.4%
2rghA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 38.0 2.80e-01 81.8% 30.1%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.50 43.0 3.59e-01 100.0% 76.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3477544 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 36.0 2.48e-01 100.0% 19.5%
4012562 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 45.0 2.77e-01 100.0% 37.5%
3208458 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 42.0 2.98e-01 92.7% 58.5%
3700833 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.51 36.0 2.62e-01 76.4% 66.3%
5041112 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 38.0 3.67e-01 94.5% 71.4%
3915527 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.51 38.0 3.57e-01 89.1% 88.0%
3962152 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.51 36.0 2.16e-01 80.0% 86.3%
4929601 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.62e-01 96.4% 28.7%
D2 medium residues 81-140
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uz0A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 43.0 3.88e-01 95.0% 77.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4321867 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.64 41.0 3.90e-01 80.0% 52.9%
3919261 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 41.0 2.84e-01 80.0% 24.2%
5074288 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.53 33.0 3.31e-01 75.0% 60.0%