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NC_051598.1__YP_009951122.1__I5G77_gp36__00036

Bact-Vir

NC_051598.1__YP_009951122.1__I5G77_gp36__00036

Identity

Accession:
NC_051598 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Timquatrovirus› Mycobacterium_phage_Findley

TaxID: 2015882

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-75
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.77 52.0 3.64e-01 70.7% 23.9%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.75 51.0 5.77e-01 91.4% 100.0%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.69 49.0 4.07e-01 75.9% 53.8%
4ihqA02 1.10.390.40 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.69 47.0 4.57e-01 94.8% 64.1%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.67 53.0 5.17e-01 93.1% 79.1%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.67 52.0 3.84e-01 84.5% 86.5%
1ekjA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.64 52.0 3.61e-01 93.1% 75.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 3.96e-01 81.0% 92.2%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.63 50.0 4.52e-01 89.7% 70.4%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 49.0 4.39e-01 87.9% 70.6%
1z5zA02 1.20.120.850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain 0.62 43.0 3.98e-01 74.1% 63.2%
4lrvF00 1.10.1220.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE 0.61 48.0 4.05e-01 87.9% 95.1%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.61 45.0 3.98e-01 81.0% 56.3%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.61 48.0 4.27e-01 93.1% 81.3%
3oduB01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 49.0 3.18e-01 93.1% 38.6%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 40.0 2.40e-01 70.7% 36.3%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.55e-01 74.1% 11.7%
3c8gD00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 46.0 3.37e-01 84.5% 89.4%
1tyyA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 49.0 3.23e-01 100.0% 50.2%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.58 49.0 3.10e-01 98.3% 85.8%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 39.0 2.35e-01 75.9% 9.1%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 3.99e-01 91.4% 66.2%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.56 39.0 3.81e-01 93.1% 66.2%
5cygB00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 44.0 2.90e-01 94.8% 86.4%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 46.0 3.55e-01 100.0% 47.1%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5072986 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.68 46.0 3.53e-01 70.7% 33.8%
3658301 3860.1.1.249 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › NFD4_C 0.67 51.0 3.45e-01 84.5% 33.6%
3620024 5081.1.1.4 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.64 53.0 3.81e-01 96.6% 89.5%
3475796 5081.1.1.4 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.63 55.0 3.86e-01 100.0% 87.2%
5042736 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.63 52.0 3.77e-01 96.6% 87.0%
3797532 5081.1.1.0 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.63 54.0 3.86e-01 100.0% 80.0%
3782021 5081.1.1.4 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.63 53.0 3.70e-01 98.3% 87.1%
3397878 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.63 49.0 2.99e-01 89.7% 67.7%
4161707 1023.1.1.1 ↗ beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.62 53.0 4.64e-01 98.3% 93.3%
4336389 1023.1.1.1 ↗ beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.62 53.0 4.70e-01 100.0% 93.3%
3261517 5081.1.1.4 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.62 49.0 3.71e-01 91.4% 90.3%
4934384 101.1.2.947 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27234 0.62 43.0 3.73e-01 72.4% 69.4%
5022259 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.60 50.0 3.63e-01 98.3% 85.4%
3591891 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.60 48.0 3.23e-01 94.8% 43.8%
3432185 101.11.1.2 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Ovate 0.60 41.0 4.05e-01 74.1% 66.2%
4982611 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 39.0 2.96e-01 84.5% 27.3%
3638160 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.59 49.0 3.22e-01 94.8% 23.4%
5000985 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.59 48.0 3.50e-01 98.3% 85.1%
3235626 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.58 53.0 3.21e-01 100.0% 73.6%
3454410 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 46.0 3.51e-01 94.8% 70.0%
4959095 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 33.0 3.77e-01 98.3% 80.0%
3868067 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 46.0 2.94e-01 93.1% 36.9%
5001620 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.57 44.0 3.68e-01 86.2% 83.8%
4938924 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.55 46.0 4.07e-01 93.1% 64.7%
3626209 3711.1.1.53 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Pepsin-I3 0.55 46.0 4.04e-01 91.4% 94.1%
3623868 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.55 45.0 3.45e-01 100.0% 90.3%
3571482 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 43.0 2.80e-01 94.8% 33.8%
3797547 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 44.0 3.43e-01 100.0% 90.3%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.54 40.0 3.28e-01 96.6% 39.5%
4928066 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.03e-01 93.1% 33.1%
3678523 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 45.0 3.46e-01 100.0% 54.3%
5061423 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 45.0 2.76e-01 94.8% 17.1%