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NC_051603.1__YP_009951607.1__I5G82_gp067__00039

Bact-Vir

NC_051603.1__YP_009951607.1__I5G82_gp067__00039

Identity

Accession:
NC_051603 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Unicornvirus› Mycobacterium_phage_Ximenita

TaxID: 2708633

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-92
PDB
Domain cluster: rep: OP172807.1__WAX16195.1__EH802P2_00090__00089__D4-73
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.72 48.0 4.74e-01 100.0% 65.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 53.0 4.14e-01 83.3% 96.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.67 52.0 4.92e-01 82.1% 100.0%
3holA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.66 58.0 4.74e-01 98.7% 87.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.65 42.0 4.54e-01 98.7% 78.8%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.65 50.0 3.46e-01 84.6% 63.1%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 57.0 4.54e-01 98.7% 98.7%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 57.0 4.57e-01 98.7% 98.7%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.63 50.0 3.90e-01 88.5% 63.8%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 54.0 5.07e-01 97.4% 99.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 47.0 4.47e-01 82.1% 98.9%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.61 48.0 3.77e-01 85.9% 97.1%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 53.0 4.24e-01 100.0% 97.5%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 3.36e-01 100.0% 40.1%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 44.0 3.51e-01 79.5% 95.3%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 50.0 3.55e-01 96.2% 81.9%
2x3nA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.59 36.0 2.94e-01 97.4% 33.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.45e-01 100.0% 40.1%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 52.0 3.33e-01 100.0% 73.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 48.0 3.96e-01 97.4% 72.2%
2olvA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 51.0 3.32e-01 100.0% 73.8%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 3.50e-01 84.6% 65.4%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 44.0 4.31e-01 83.3% 86.9%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.56 48.0 4.45e-01 96.2% 94.9%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 48.0 4.34e-01 98.7% 96.4%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.60e-01 76.9% 99.1%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 43.0 3.44e-01 84.6% 87.9%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.46e-01 84.6% 68.2%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 41.0 3.43e-01 83.3% 89.5%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 3.63e-01 92.3% 59.0%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 42.0 3.66e-01 85.9% 89.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 3.90e-01 96.2% 93.0%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 45.0 3.22e-01 92.3% 66.9%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 45.0 3.16e-01 92.3% 61.9%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.68e-01 92.3% 70.0%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.72e-01 89.7% 70.1%
4hh2C04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.64e-01 83.3% 76.1%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.46e-01 92.3% 66.9%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 47.0 3.87e-01 100.0% 100.0%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 3.36e-01 83.3% 68.1%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 41.0 3.65e-01 89.7% 91.1%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.52 45.0 3.43e-01 94.9% 84.1%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.40e-01 83.3% 95.5%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 37.0 3.87e-01 80.8% 86.6%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.23e-01 78.2% 60.4%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 39.0 3.40e-01 87.2% 88.9%
2k5gA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.05e-01 83.3% 59.4%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.51 42.0 3.31e-01 91.0% 98.8%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.49e-01 83.3% 75.7%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 2.89e-01 75.6% 41.7%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 44.0 3.16e-01 100.0% 76.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.85 54.0 5.56e-01 98.7% 68.0%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.58 39.0 4.60e-01 97.4% 100.0%
3682205 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 3.92e-01 94.9% 52.4%
3800869 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.55 41.0 3.28e-01 83.3% 63.9%
3229319 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.25e-01 98.7% 72.7%
None — 0.53 41.0 3.12e-01 83.3% 50.0%
4000362 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.52 44.0 3.98e-01 96.2% 68.6%
5077444 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.46e-01 88.5% 88.9%
5071871 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.40e-01 85.9% 89.2%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.67e-01 84.6% 99.0%
5071935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.40e-01 85.9% 73.8%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.69e-01 94.9% 60.9%
5068380 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.37e-01 85.9% 78.5%
5075282 331.6.1.0 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.50 36.0 3.82e-01 98.7% 84.3%
5074857 223.2.1.59 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Roc 0.50 39.0 2.72e-01 89.7% 21.9%
4944328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.31e-01 84.6% 76.2%