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NC_051607.1__YP_009951999.1__I5G86_gp58__00040

Bact-Vir

NC_051607.1__YP_009951999.1__I5G86_gp58__00040

Identity

Accession:
NC_051607 ↗
Kingdom:
phage

Quality

66.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Amginevirus› Mycobacterium_phage_DarthP

TaxID: 2015879

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-135
PDB
Domain cluster: rep: IMGVR_UViG_2917938226_000001-2917938226-2917940976__DFULL
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12728.14 best HTH_17 35.3 1.60e-08 65.8% 92.2%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.85 59.0 6.09e-01 72.4% 81.9%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.82 61.0 4.89e-01 77.6% 91.4%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.82 60.0 4.99e-01 76.3% 78.6%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.80 57.0 5.69e-01 75.0% 87.2%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 56.0 5.12e-01 73.7% 59.6%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 57.0 4.85e-01 76.3% 76.0%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.78 55.0 5.68e-01 73.7% 82.2%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.78 56.0 4.64e-01 75.0% 74.6%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.99e-01 77.6% 91.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 53.0 5.65e-01 72.4% 86.6%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 55.0 5.30e-01 75.0% 70.6%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 52.0 4.75e-01 73.7% 85.6%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.71 53.0 5.23e-01 77.6% 92.4%
1z4hA01 1.10.238.160 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.69 47.0 5.26e-01 71.1% 96.6%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 51.0 5.31e-01 77.6% 92.6%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 48.0 4.71e-01 73.7% 75.3%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.65 45.0 4.33e-01 72.4% 68.6%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.07e-01 73.7% 59.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.07e-01 77.6% 75.3%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.71e-01 78.9% 59.1%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.07e-01 77.6% 73.0%
1aj4A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 44.0 3.51e-01 82.9% 50.6%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 42.0 2.99e-01 78.9% 34.1%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.49e-01 78.9% 50.7%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.43e-01 76.3% 49.2%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.60e-01 76.3% 54.1%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.80e-01 75.0% 68.9%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.61e-01 76.3% 59.6%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.15e-01 72.4% 38.4%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 2.83e-01 78.9% 33.8%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.37e-01 78.9% 65.2%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.37e-01 78.9% 46.4%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.84e-01 75.0% 71.6%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.70e-01 81.6% 66.1%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.64e-01 76.3% 70.0%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.85e-01 77.6% 77.6%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.92e-01 78.9% 84.5%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.77e-01 77.6% 78.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.41e-01 77.6% 51.6%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.75e-01 71.1% 75.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.63e-01 75.0% 72.2%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.54 36.0 3.77e-01 71.1% 98.5%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.74e-01 72.4% 75.6%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.74e-01 75.0% 80.0%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.53 38.0 3.32e-01 77.6% 77.0%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.14e-01 77.6% 44.6%
2nraC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.50e-01 97.4% 56.7%
4r2yC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 28.0 2.97e-01 82.9% 56.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070666 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.92 64.0 7.59e-01 72.4% 100.0%
4994568 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.90 62.0 7.28e-01 71.1% 98.2%
3954117 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.89 70.0 6.76e-01 82.9% 83.5%
5064906 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.88 61.0 7.11e-01 71.1% 98.2%
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 69.0 6.78e-01 81.6% 87.5%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 62.0 7.22e-01 72.4% 100.0%
4547937 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 65.0 7.44e-01 76.3% 100.0%
1710781 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.87 61.0 7.04e-01 73.7% 98.2%
3589467 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.87 72.0 6.89e-01 86.8% 90.6%
3953197 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.87 66.0 6.05e-01 78.9% 67.4%
4527613 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.86 60.0 5.91e-01 71.1% 69.6%
2967124 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 59.0 6.20e-01 71.1% 79.7%
4101677 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.84 60.0 4.83e-01 73.7% 43.0%
3288205 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.84 58.0 5.77e-01 72.4% 71.2%
5032504 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.84 58.0 6.73e-01 73.7% 100.0%
5075145 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 59.0 6.38e-01 75.0% 100.0%
4995042 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 59.0 5.66e-01 73.7% 100.0%
3290892 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 58.0 5.17e-01 73.7% 56.2%
4929856 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.82 58.0 5.47e-01 73.7% 65.6%
3975516 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.82 58.0 5.14e-01 73.7% 89.5%
3976015 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 58.0 5.73e-01 73.7% 72.5%
3949463 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.81 60.0 5.13e-01 76.3% 53.9%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.81 56.0 5.52e-01 71.1% 71.2%
4682727 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 56.0 6.41e-01 71.1% 100.0%
4548007 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 62.0 5.97e-01 80.3% 78.8%
5007668 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.81 58.0 4.85e-01 75.0% 74.4%
3387406 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.81 57.0 5.08e-01 73.7% 56.2%
3840108 101.1.9.95 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.80 58.0 6.46e-01 77.6% 96.7%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.80 59.0 4.13e-01 77.6% 92.2%
3966930 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.80 59.0 5.18e-01 77.6% 89.1%
5028046 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 55.0 6.29e-01 71.1% 100.0%
3281873 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.80 59.0 4.13e-01 77.6% 40.4%
1068666 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.80 57.0 5.20e-01 75.0% 60.0%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.79 59.0 5.13e-01 77.6% 80.9%
3284986 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.79 56.0 4.75e-01 73.7% 77.5%
3589130 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 55.0 6.36e-01 72.4% 100.0%
4518241 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.79 55.0 5.59e-01 72.4% 77.3%
4050041 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 54.0 6.05e-01 71.1% 96.7%
3279459 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.78 56.0 4.67e-01 73.7% 80.5%
4974775 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 56.0 6.17e-01 75.0% 96.7%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.78 57.0 4.76e-01 77.6% 74.6%
4096952 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 54.0 4.69e-01 72.4% 50.4%
3974607 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 57.0 4.73e-01 77.6% 70.8%
1827815 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 55.0 5.76e-01 73.7% 85.3%
4420911 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 54.0 4.41e-01 73.7% 43.7%
4334333 101.1.9.1 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.76 63.0 5.09e-01 89.5% 75.7%
3286117 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 56.0 4.71e-01 77.6% 72.0%
3291218 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 55.0 4.60e-01 77.6% 67.7%
4254112 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.75 56.0 5.27e-01 77.6% 68.9%
4266122 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 53.0 4.94e-01 76.3% 65.3%
4674139 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.73 53.0 4.37e-01 75.0% 51.5%
4090636 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 52.0 5.38e-01 76.3% 90.0%
4051681 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 52.0 4.30e-01 76.3% 46.7%
3979592 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.71 50.0 4.33e-01 75.0% 52.5%
3979434 101.1.9.101 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1441 0.70 48.0 5.45e-01 72.4% 100.0%
3946974 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 48.0 4.31e-01 72.4% 54.3%
3976170 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.69 51.0 5.27e-01 78.9% 98.6%
3948669 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.67 50.0 4.40e-01 80.3% 67.0%