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NC_051607.1__YP_009952047.1__I5G86_gp10__00088

Bact-Vir

NC_051607.1__YP_009952047.1__I5G86_gp10__00088

Identity

Accession:
NC_051607 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 137-218
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.75 52.0 5.52e-01 73.2% 98.6%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.72 57.0 5.97e-01 100.0% 92.0%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 54.0 4.93e-01 100.0% 67.0%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 50.0 4.39e-01 100.0% 53.1%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 53.0 4.97e-01 100.0% 71.0%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.65 53.0 4.93e-01 91.5% 69.9%
3netB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.65 55.0 3.79e-01 97.6% 90.2%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.64 50.0 5.23e-01 96.3% 95.8%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 46.0 4.13e-01 78.0% 54.8%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.63 44.0 3.85e-01 76.8% 48.4%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.62 45.0 4.09e-01 78.0% 55.8%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 50.0 4.86e-01 90.2% 83.2%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 46.0 4.48e-01 80.5% 71.9%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.44e-01 92.7% 85.7%
3uqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 49.0 4.70e-01 95.1% 79.6%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 4.15e-01 85.4% 84.1%
1weyA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 43.0 4.07e-01 92.7% 62.5%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.59 51.0 4.12e-01 100.0% 69.0%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 43.0 3.77e-01 80.5% 49.6%
2mcqA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.58 44.0 4.52e-01 95.1% 90.7%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 48.0 4.29e-01 100.0% 99.2%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.56 40.0 4.24e-01 84.1% 88.6%
2kwaA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 38.0 3.67e-01 75.6% 59.4%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.55 48.0 4.46e-01 100.0% 99.1%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 4.01e-01 100.0% 73.4%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 32.0 3.69e-01 100.0% 82.8%
2b30A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 47.0 4.32e-01 100.0% 98.2%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 44.0 4.18e-01 90.2% 82.8%
1k3eB02 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 46.0 4.30e-01 96.3% 75.2%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.77e-01 79.3% 72.0%
3getA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 3.75e-01 100.0% 69.1%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.50e-01 74.4% 62.8%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.30e-01 96.3% 96.5%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.94e-01 86.6% 87.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 44.0 4.18e-01 100.0% 99.0%
3bc8A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.79e-01 100.0% 68.1%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.44e-01 86.6% 63.4%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 44.0 4.26e-01 98.8% 87.6%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.59e-01 92.7% 64.4%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.45e-01 74.4% 62.9%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 4.02e-01 85.4% 92.0%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.50 40.0 3.80e-01 86.6% 90.8%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 44.0 3.74e-01 100.0% 91.5%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.50 43.0 3.87e-01 100.0% 100.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994876 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.76 52.0 5.21e-01 74.4% 68.2%
3386666 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.72 51.0 4.93e-01 73.2% 67.8%
3927598 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.72 49.0 4.76e-01 72.0% 64.4%
3967558 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.70 47.0 4.72e-01 73.2% 67.1%
3283785 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.69 55.0 5.32e-01 100.0% 76.7%
3284992 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.68 50.0 4.90e-01 98.8% 71.6%
5012700 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 49.0 4.88e-01 92.7% 76.5%
4079590 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.66 53.0 4.93e-01 100.0% 71.0%
3738074 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.65 53.0 5.16e-01 97.6% 80.0%
3712541 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.65 47.0 4.20e-01 76.8% 53.9%
3592287 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.65 47.0 4.24e-01 76.8% 54.8%
1125246 306.3.1.2 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 0.65 46.0 4.74e-01 81.7% 78.9%
4943665 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.64 50.0 5.18e-01 98.8% 93.3%
4519566 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.63 44.0 4.52e-01 84.1% 76.2%
136198 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.63 45.0 4.00e-01 76.8% 52.1%
3437557 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 47.0 3.13e-01 80.5% 21.5%
3439329 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 46.0 3.06e-01 80.5% 19.5%
3366847 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 46.0 3.10e-01 80.5% 22.1%
None 0.61 46.0 2.71e-01 80.5% 10.3%
4124124 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.61 45.0 4.45e-01 90.2% 74.1%
4682600 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.61 46.0 3.18e-01 80.5% 64.6%
3462996 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.61 45.0 3.03e-01 80.5% 20.6%
3833385 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 44.0 3.67e-01 100.0% 43.3%
5072113 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.59 51.0 4.62e-01 100.0% 71.4%
3385378 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.59 47.0 3.38e-01 100.0% 28.8%
3577575 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 43.0 4.42e-01 90.2% 81.2%
3289052 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.58 50.0 4.91e-01 100.0% 97.8%
3960213 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.58 51.0 4.59e-01 100.0% 81.7%
3553689 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 42.0 4.41e-01 90.2% 85.3%
2713319 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.57 34.0 3.79e-01 79.3% 75.4%
3616235 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.36e-01 90.2% 81.2%
3514901 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.57 43.0 4.44e-01 90.2% 86.7%
3640581 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 42.0 2.66e-01 81.7% 15.2%
3409863 306.3.1.2 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 0.56 46.0 4.20e-01 90.2% 78.0%
4667438 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.56 42.0 3.40e-01 79.3% 45.2%
141455 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.56 38.0 3.67e-01 75.6% 59.4%
5017294 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.55 38.0 3.91e-01 82.9% 77.3%
3604327 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 38.0 3.32e-01 92.7% 44.6%
4032715 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 48.0 4.27e-01 100.0% 97.6%
3937930 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.55 41.0 2.76e-01 81.7% 17.5%
4945921 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.48e-01 92.7% 98.6%
3513842 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.55 39.0 4.29e-01 90.2% 95.4%
4144334 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.54 45.0 4.07e-01 90.2% 88.2%
3647855 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.54 42.0 2.95e-01 84.1% 90.9%
3819322 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 3.01e-01 100.0% 25.3%
3244029 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.54 44.0 4.56e-01 97.6% 100.0%
5049150 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 4.22e-01 90.2% 96.9%
3489258 306.8.1.0 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like 0.53 38.0 3.55e-01 75.6% 59.0%
3785105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.18e-01 90.2% 95.8%
4011288 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 35.0 3.96e-01 90.2% 93.3%
3574822 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.67e-01 84.1% 59.1%
3656661 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 39.0 2.65e-01 81.7% 19.5%
None 0.52 40.0 4.22e-01 89.0% 92.0%
4997572 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 41.0 3.85e-01 100.0% 68.2%
3237291 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 4.23e-01 92.7% 95.6%
4956538 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 37.0 3.81e-01 86.6% 81.3%
4027635 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.52 39.0 4.02e-01 86.6% 88.0%
4932565 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.51 36.0 3.59e-01 80.5% 68.9%
3964427 304.132.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in 2,3-bisphosphoglycerate-independent phosphoglycerate mutase › ferredoxin-like domain in 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 0.51 41.0 3.59e-01 95.1% 69.3%
4467985 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.51 41.0 3.92e-01 90.2% 82.0%
D2 medium residues 2-74
PDB
D3 medium residues 77-116
PDB