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NC_051608.1__YP_009952054.1__I5G87_gp01__00001
Bact-VirNC_051608.1__YP_009952054.1__I5G87_gp01__00001
Identity
- Accession:
- NC_051608 ↗
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Taxonomy
TaxID: 2599862
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-44
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24182.2 best | G1RFP | 51.3 | 9.60e-14 | 85.4% | 91.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.75 | 60.0 | 4.15e-01 | 92.7% | 28.2% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.75 | 59.0 | 4.66e-01 | 100.0% | 40.7% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.74 | 56.0 | 4.68e-01 | 82.9% | 48.6% |
| 2id3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 58.0 | 5.49e-01 | 85.4% | 77.6% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.73 | 58.0 | 4.03e-01 | 97.6% | 29.4% |
| 3lulA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.72 | 51.0 | 3.70e-01 | 100.0% | 27.7% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 59.0 | 4.83e-01 | 100.0% | 49.4% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.71 | 55.0 | 3.82e-01 | 100.0% | 54.1% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.70 | 49.0 | 4.57e-01 | 90.2% | 60.0% |
| 2ja2A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.70 | 52.0 | 4.82e-01 | 90.2% | 63.5% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.70 | 56.0 | 3.57e-01 | 97.6% | 17.6% |
| 1dp3A00 | 1.10.10.450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding | 0.70 | 53.0 | 4.97e-01 | 100.0% | 65.5% |
| 3adoA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 62.0 | 4.00e-01 | 100.0% | 29.6% |
| 3gziA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 56.0 | 3.60e-01 | 100.0% | 19.7% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.67 | 49.0 | 4.31e-01 | 90.2% | 52.4% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 57.0 | 3.85e-01 | 100.0% | 27.7% |
| 1w8iA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.65 | 51.0 | 3.55e-01 | 95.1% | 24.7% |
| 4rk2A00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.65 | 54.0 | 3.16e-01 | 100.0% | 83.2% |
| 4myzC00 | 6.10.250.3430 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 51.0 | 4.66e-01 | 87.8% | 66.7% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 48.0 | 4.21e-01 | 100.0% | 51.3% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 53.0 | 4.78e-01 | 92.7% | 71.9% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.63 | 49.0 | 4.42e-01 | 92.7% | 60.3% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 44.0 | 4.09e-01 | 100.0% | 61.7% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 50.0 | 4.37e-01 | 97.6% | 95.4% |
| 2h8pC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 44.0 | 4.25e-01 | 100.0% | 71.9% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.55 | 46.0 | 2.99e-01 | 100.0% | 42.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517516 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.80 | 68.0 | 4.27e-01 | 97.6% | 18.2% |
| 3398253 | 601.4.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › NIT | 0.77 | 55.0 | 3.79e-01 | 75.6% | 46.2% |
| 4975796 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.76 | 68.0 | 5.08e-01 | 100.0% | 92.6% |
| 4518250 | 109.4.1.1660 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 | 0.74 | 63.0 | 3.63e-01 | 100.0% | 26.4% |
| 4478129 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.74 | 60.0 | 4.72e-01 | 100.0% | 42.2% |
| 3854050 | 604.12.1.43 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 | 0.72 | 61.0 | 4.31e-01 | 100.0% | 31.1% |
| 4422279 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.71 | 62.0 | 5.13e-01 | 100.0% | 54.7% |
| 4948085 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 62.0 | 4.59e-01 | 100.0% | 83.0% |
| 3922168 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.67 | 51.0 | 4.40e-01 | 95.1% | 50.0% |
| None | — | 0.67 | 56.0 | 3.49e-01 | 100.0% | 19.6% | |
| 4979271 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.64 | 55.0 | 3.61e-01 | 92.7% | 36.0% |
| 3509156 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.64 | 57.0 | 4.74e-01 | 100.0% | 78.6% |
| 3544646 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.64 | 56.0 | 4.69e-01 | 100.0% | 78.6% |
| 3993206 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.61 | 53.0 | 4.41e-01 | 97.6% | 78.6% |