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NC_051613.1__YP_009952581.1__I5G92_gp63__00063
Bact-VirNC_051613.1__YP_009952581.1__I5G92_gp63__00063
Identity
- Accession:
- NC_051613 ↗
- Kingdom:
- phage
Quality
67.7
mean pLDDT
Taxonomy
TaxID: 1913035
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
rep: NC_070935.1__YP_010665446.1__PQB71_gp87__00077__D16-69
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.77 | 56.0 | 5.47e-01 | 76.9% | 70.4% |
| 3we5A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.68 | 60.0 | 4.69e-01 | 100.0% | 66.0% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.67 | 59.0 | 3.83e-01 | 96.9% | 50.4% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.67 | 47.0 | 3.72e-01 | 81.5% | 35.8% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 59.0 | 3.83e-01 | 98.5% | 43.2% |
| 2mc8A00 | 3.10.450.590 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 50.0 | 4.16e-01 | 81.5% | 99.1% |
| 1dc1A01 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.65 | 58.0 | 4.00e-01 | 100.0% | 72.1% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.65 | 55.0 | 3.49e-01 | 96.9% | 63.4% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 47.0 | 4.44e-01 | 76.9% | 93.7% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 48.0 | 3.60e-01 | 83.1% | 33.1% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 53.0 | 3.43e-01 | 98.5% | 38.0% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.63 | 46.0 | 4.22e-01 | 98.5% | 58.4% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.62 | 51.0 | 3.96e-01 | 90.8% | 82.9% |
| 1tuhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 3.48e-01 | 75.4% | 85.5% |
| 1uuzB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.61 | 49.0 | 3.97e-01 | 89.2% | 93.8% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 45.0 | 3.96e-01 | 81.5% | 53.7% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.61 | 52.0 | 4.71e-01 | 100.0% | 83.7% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 46.0 | 4.46e-01 | 81.5% | 83.6% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 51.0 | 3.88e-01 | 100.0% | 38.7% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.60 | 49.0 | 3.28e-01 | 87.7% | 38.3% |
| 1yf9A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.60 | 49.0 | 3.79e-01 | 93.8% | 91.1% |
| 4kc7A02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 46.0 | 4.02e-01 | 83.1% | 55.6% |
| 2l5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 49.0 | 3.64e-01 | 93.8% | 47.4% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 41.0 | 3.53e-01 | 73.8% | 100.0% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.58 | 46.0 | 3.74e-01 | 87.7% | 70.3% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.58 | 50.0 | 3.91e-01 | 100.0% | 80.7% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 48.0 | 4.07e-01 | 95.4% | 58.8% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 44.0 | 3.27e-01 | 83.1% | 39.2% |
| 2ztnA02 | 2.40.30.190 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 45.0 | 3.59e-01 | 89.2% | 74.5% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 39.0 | 4.01e-01 | 73.8% | 81.0% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 47.0 | 3.11e-01 | 98.5% | 60.9% |
| 1pv1A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 48.0 | 3.14e-01 | 96.9% | 48.3% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.55 | 38.0 | 3.03e-01 | 73.8% | 34.2% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 41.0 | 2.94e-01 | 81.5% | 95.6% |
| 3q6kA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 46.0 | 2.91e-01 | 100.0% | 72.6% |
| 3jcmN01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.20e-01 | 100.0% | 95.7% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 44.0 | 3.59e-01 | 93.8% | 58.9% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 37.0 | 3.22e-01 | 78.5% | 57.0% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.74e-01 | 87.7% | 75.6% |
| 3pufL00 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 36.0 | 3.05e-01 | 73.8% | 53.4% |
| 3r2uB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 41.0 | 2.79e-01 | 89.2% | 63.1% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 38.0 | 3.13e-01 | 87.7% | 56.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.80 | 54.0 | 5.64e-01 | 76.9% | 75.0% |
| 3821077 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 61.0 | 3.76e-01 | 98.5% | 24.5% |
| 5003276 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.67 | 43.0 | 4.39e-01 | 98.5% | 66.2% |
| 1290096 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.67 | 59.0 | 4.23e-01 | 98.5% | 66.8% |
| 3544845 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.66 | 56.0 | 3.49e-01 | 95.4% | 92.5% |
| 3468462 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.66 | 54.0 | 4.43e-01 | 90.8% | 90.8% |
| 3264337 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.66 | 57.0 | 3.87e-01 | 100.0% | 98.4% |
| 4928052 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.65 | 58.0 | 3.62e-01 | 98.5% | 32.6% |
| 4926940 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.65 | 54.0 | 3.97e-01 | 92.3% | 76.6% |
| 1887056 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 48.0 | 3.96e-01 | 80.0% | 90.0% |
| None | — | 0.65 | 56.0 | 3.65e-01 | 98.5% | 84.0% | |
| 3275976 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.64 | 56.0 | 4.52e-01 | 100.0% | 95.4% |
| 3249982 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.63 | 55.0 | 4.38e-01 | 100.0% | 95.6% |
| 3225194 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.63 | 55.0 | 4.45e-01 | 100.0% | 97.7% |
| 3250666 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.63 | 55.0 | 4.35e-01 | 100.0% | 96.3% |
| 2125769 | 2.5.1.1 ↗ | beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase | 0.61 | 52.0 | 3.38e-01 | 93.8% | 52.8% |
| 4363296 | 330.11.1.1 ↗ | a+b two layers › dsRBD-like › Anti-lipopolysaccharide factor (ALF) › Anti-lipopolysaccharide factor (ALF) › Anti-LPS-SCYG | 0.61 | 52.0 | 4.59e-01 | 100.0% | 72.0% |
| 3739310 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.61 | 44.0 | 3.36e-01 | 78.5% | 45.6% |
| 3229228 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.61 | 53.0 | 4.44e-01 | 100.0% | 91.3% |
| 5033887 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.60 | 45.0 | 3.84e-01 | 83.1% | 47.0% |
| 4680096 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.60 | 52.0 | 4.92e-01 | 100.0% | 80.0% |
| 5009292 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 42.0 | 2.88e-01 | 75.4% | 20.4% |
| 3574934 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.59 | 41.0 | 3.39e-01 | 73.8% | 56.8% |
| 355233 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.59 | 44.0 | 4.18e-01 | 81.5% | 75.0% |
| 5009756 | 4972.1.1.1 ↗ | beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C | 0.59 | 50.0 | 4.07e-01 | 95.4% | 64.8% |
| 11122 | 213.2.1.1 ↗ | a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy › Ivy | 0.59 | 47.0 | 3.82e-01 | 89.2% | 93.0% |
| 3739339 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.58 | 50.0 | 4.56e-01 | 100.0% | 80.0% |
| 4007747 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.58 | 50.0 | 2.75e-01 | 100.0% | 28.6% |
| 3216950 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.56 | 39.0 | 3.41e-01 | 75.4% | 68.2% |
| 4981911 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.56 | 41.0 | 2.87e-01 | 81.5% | 75.4% |
| 3729944 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.56 | 49.0 | 4.15e-01 | 100.0% | 84.5% |
| 3642413 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.56 | 47.0 | 3.86e-01 | 100.0% | 99.3% |
| 424930 | 5.1.3.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP | 0.55 | 47.0 | 2.97e-01 | 100.0% | 55.4% |
| 3883359 | 59.1.2.1 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC | 0.53 | 37.0 | 3.08e-01 | 73.8% | 58.4% |
| 4595973 | 1.1.12.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins | 0.52 | 40.0 | 3.21e-01 | 80.0% | 57.5% |
| 5048592 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 46.0 | 3.67e-01 | 98.5% | 60.8% |
| 3758536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 39.0 | 3.85e-01 | 84.6% | 82.9% |
| 4031368 | 3264.1.1.0 ↗ | 0.52 | 43.0 | 3.35e-01 | 100.0% | 42.1% | |
| 4933430 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.51 | 45.0 | 3.33e-01 | 100.0% | 72.6% |
| 3736722 | 9.14.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W | 0.51 | 42.0 | 3.56e-01 | 92.3% | 76.4% |
D2
high
residues 88-164