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NC_051613.1__YP_009952584.1__I5G92_gp66__00066

Bact-Vir

NC_051613.1__YP_009952584.1__I5G92_gp66__00066

Identity

Accession:
NC_051613 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anayavirus› Mycobacterium_phage_Amelie

TaxID: 1913035

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-237
PDB
Domain cluster: rep: MN094788.1__QDH83552.1__X__00162__D1-27_66-169
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25109.2 best HAD_PNKP 62.1 8.80e-17 100.0% 93.0%
D2 medium residues 1-83
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 47.0 4.15e-01 78.3% 50.4%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 47.0 4.50e-01 81.9% 65.7%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 44.0 4.71e-01 78.3% 86.1%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 46.0 4.81e-01 79.5% 87.7%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.68e-01 72.3% 60.5%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.61 41.0 3.97e-01 71.1% 65.7%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 46.0 3.94e-01 86.7% 100.0%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.89e-01 73.5% 83.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.33e-01 71.1% 45.2%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.74e-01 73.5% 74.5%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.38e-01 73.5% 58.6%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.63e-01 72.3% 68.6%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.38e-01 74.7% 67.4%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.67e-01 73.5% 70.5%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.57e-01 71.1% 67.9%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.69e-01 73.5% 84.3%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.40e-01 73.5% 66.1%
2nraC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.17e-01 78.3% 70.7%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.51 40.0 4.22e-01 88.0% 98.6%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.52e-01 85.5% 79.5%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 35.0 3.03e-01 71.1% 48.9%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 36.0 3.37e-01 73.5% 65.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4176315 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 50.0 6.13e-01 77.1% 94.4%
4933561 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 50.0 5.92e-01 71.1% 96.4%
3953197 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 51.0 4.93e-01 74.7% 60.0%
5075145 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 52.0 5.70e-01 73.5% 93.8%
3954117 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 49.0 4.92e-01 74.7% 67.1%
5073619 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 52.0 5.80e-01 74.7% 98.5%
5073620 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 53.0 5.89e-01 80.7% 100.0%
4024211 101.1.9.9 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › XPA_C 0.72 49.0 5.29e-01 71.1% 84.3%
3957229 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 49.0 5.67e-01 72.3% 100.0%
3979592 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.71 49.0 4.30e-01 71.1% 52.5%
4087721 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 47.0 5.24e-01 80.7% 87.7%
3951460 101.30.1.3 ↗ alpha arrays › HTH › Rv2175c › Rv2175c › Rv2175c_wHTH 0.70 49.0 4.85e-01 78.3% 67.8%
3942751 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.69 50.0 4.39e-01 75.9% 51.7%
3948669 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.68 54.0 4.85e-01 85.5% 83.5%
3948248 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 48.0 5.22e-01 78.3% 95.4%
3586960 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.66 48.0 4.65e-01 80.7% 67.4%
3281073 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.66 48.0 4.45e-01 78.3% 60.0%
3976170 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.65 49.0 5.29e-01 85.5% 95.7%
4951929 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.65 45.0 4.76e-01 83.1% 81.3%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.65 47.0 4.29e-01 80.7% 56.5%
3961155 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 49.0 4.15e-01 80.7% 49.6%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 48.0 4.73e-01 83.1% 74.4%
4672676 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.62 45.0 3.83e-01 79.5% 45.7%
4961487 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 3.73e-01 71.1% 64.3%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.59 43.0 3.93e-01 79.5% 55.7%
4504812 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.59 43.0 4.30e-01 80.7% 76.5%
388408 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.58 42.0 3.76e-01 79.5% 53.3%
3587362 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.58 41.0 3.44e-01 73.5% 58.3%
5039585 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.57 39.0 3.87e-01 71.1% 74.4%
5030237 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 4.08e-01 72.3% 86.3%
5005295 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 40.0 3.56e-01 75.9% 59.2%
5051534 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 39.0 3.05e-01 73.5% 42.7%
4999286 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 37.0 2.97e-01 71.1% 41.1%
2982277 327.16.1.10 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 0.52 35.0 3.89e-01 83.1% 92.1%
3532258 327.11.2.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.52 40.0 3.87e-01 84.3% 88.4%
4038796 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.51 35.0 3.64e-01 84.3% 78.7%
3486431 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 36.0 2.51e-01 74.7% 75.6%
3409557 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.50 38.0 2.75e-01 83.1% 63.5%
3847949 327.11.2.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.50 39.0 3.67e-01 86.7% 80.0%