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NC_051616.1__YP_009952871.1__I5G95_gp23__00079
Bact-VirNC_051616.1__YP_009952871.1__I5G95_gp23__00079
Identity
- Accession:
- NC_051616 ↗
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Taxonomy
TaxID: 2024005
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-51
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 61.0 | 4.01e-01 | 79.2% | 49.7% |
| 1okqA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 60.0 | 4.02e-01 | 79.2% | 50.3% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 59.0 | 3.67e-01 | 79.2% | 89.2% |
| 3u1xA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.75 | 62.0 | 3.99e-01 | 91.7% | 53.5% |
| 3h3lC00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.75 | 61.0 | 3.95e-01 | 91.7% | 49.8% |
| 2v7sA00 | 3.30.2030.20 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.75 | 56.0 | 3.81e-01 | 81.2% | 24.9% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.72 | 63.0 | 4.87e-01 | 100.0% | 46.7% |
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 52.0 | 4.06e-01 | 77.1% | 37.3% |
| 1k8kF00 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.72 | 59.0 | 4.02e-01 | 91.7% | 50.3% |
| 2htaA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.71 | 61.0 | 3.77e-01 | 100.0% | 61.3% |
| 2qzuA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.71 | 61.0 | 5.12e-01 | 100.0% | 61.2% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 48.0 | 3.29e-01 | 72.9% | 27.3% |
| 4guzA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.69 | 62.0 | 4.11e-01 | 100.0% | 56.9% |
| 6fmeA03 | 2.20.220.10 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases | 0.69 | 61.0 | 5.66e-01 | 100.0% | 87.1% |
| 3ip3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.69 | 61.0 | 3.98e-01 | 100.0% | 62.1% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 59.0 | 3.60e-01 | 100.0% | 46.8% |
| 1w5rA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.67 | 59.0 | 3.98e-01 | 100.0% | 59.5% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.65 | 48.0 | 3.58e-01 | 81.2% | 89.1% |
| 1w4tA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.64 | 56.0 | 3.79e-01 | 100.0% | 57.9% |
| 3rf9B02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 55.0 | 3.36e-01 | 100.0% | 41.3% |
| 3b77A01 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.62 | 54.0 | 4.30e-01 | 100.0% | 57.0% |
| 3moiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 52.0 | 3.44e-01 | 100.0% | 85.9% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.60 | 46.0 | 4.11e-01 | 83.3% | 57.1% |
| 4obiA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.58 | 48.0 | 4.11e-01 | 100.0% | 55.2% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.58 | 50.0 | 3.63e-01 | 100.0% | 80.4% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.57 | 49.0 | 3.67e-01 | 100.0% | 48.5% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 45.0 | 3.52e-01 | 87.5% | 47.1% |
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.56 | 40.0 | 3.41e-01 | 79.2% | 50.0% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 45.0 | 3.21e-01 | 97.9% | 75.6% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 43.0 | 3.86e-01 | 93.8% | 85.9% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 42.0 | 2.83e-01 | 100.0% | 53.8% |
| 6k5gA01 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.52 | 39.0 | 2.59e-01 | 89.6% | 18.3% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.51 | 41.0 | 3.26e-01 | 100.0% | 49.6% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 44.0 | 3.41e-01 | 100.0% | 74.5% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.79 | 69.0 | 5.45e-01 | 100.0% | 48.4% |
| 3929502 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.79 | 70.0 | 5.59e-01 | 100.0% | 51.1% |
| 4960303 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.76 | 67.0 | 5.33e-01 | 97.9% | 75.8% |
| 4977715 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.74 | 66.0 | 4.91e-01 | 97.9% | 73.9% |
| 3222321 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.74 | 56.0 | 3.45e-01 | 100.0% | 15.3% |
| 3878795 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.74 | 66.0 | 3.84e-01 | 100.0% | 34.8% |
| 4998507 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.73 | 56.0 | 5.42e-01 | 83.3% | 79.6% |
| 3568386 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.72 | 64.0 | 3.95e-01 | 100.0% | 50.2% |
| 6659 | 4350.1.1.1 ↗ | a+b two layers › PG1388-like › PG1388-like › PG1388-like › DUF3256 | 0.72 | 63.0 | 4.14e-01 | 100.0% | 24.9% |
| 4672246 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.71 | 62.0 | 4.39e-01 | 100.0% | 44.0% |
| None | — | 0.71 | 63.0 | 3.68e-01 | 100.0% | 35.0% | |
| 4069893 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.71 | 51.0 | 3.82e-01 | 79.2% | 90.4% |
| 3600206 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.71 | 61.0 | 4.13e-01 | 97.9% | 62.9% |
| 3253640 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.70 | 61.0 | 3.80e-01 | 100.0% | 78.9% |
| 3248113 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.70 | 62.0 | 3.79e-01 | 100.0% | 74.1% |
| 4453958 | 274.1.1.23 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF5374 | 0.69 | 47.0 | 4.42e-01 | 72.9% | 56.7% |
| 4029635 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.69 | 52.0 | 3.79e-01 | 83.3% | 65.2% |
| 3972703 | 9.1.1.17 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF | 0.68 | 59.0 | 4.61e-01 | 100.0% | 48.6% |
| 3804495 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.67 | 48.0 | 2.87e-01 | 77.1% | 12.5% |
| 3925754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.67 | 53.0 | 3.81e-01 | 97.9% | 31.1% |
| 4951147 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.65 | 58.0 | 4.34e-01 | 100.0% | 83.3% |
| 3520852 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.65 | 56.0 | 3.92e-01 | 100.0% | 30.7% |
| 3710430 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.65 | 55.0 | 3.81e-01 | 100.0% | 38.3% |
| 3616618 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 51.0 | 3.06e-01 | 91.7% | 21.6% |
| 3929729 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.63 | 46.0 | 3.15e-01 | 83.3% | 20.0% |
| 5016314 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.63 | 54.0 | 3.83e-01 | 97.9% | 56.7% |
| 5074419 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.63 | 42.0 | 3.90e-01 | 70.8% | 75.4% |
| 4027205 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.62 | 45.0 | 2.76e-01 | 79.2% | 17.6% |
| 3281771 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.62 | 54.0 | 4.17e-01 | 100.0% | 49.1% |
| 5028466 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.62 | 53.0 | 4.02e-01 | 100.0% | 84.2% |
| 4019192 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.58 | 49.0 | 3.47e-01 | 100.0% | 43.6% |
| 3925491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 44.0 | 2.97e-01 | 91.7% | 21.4% |
| 4975535 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.56 | 38.0 | 3.39e-01 | 75.0% | 52.5% |
| 4984519 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.54 | 46.0 | 4.16e-01 | 100.0% | 85.7% |
| 3773831 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 45.0 | 2.52e-01 | 97.9% | 11.6% |
| 3908602 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 44.0 | 2.71e-01 | 97.9% | 20.9% |
| 3643793 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 44.0 | 2.64e-01 | 97.9% | 22.9% |
| 3903537 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.52 | 41.0 | 3.23e-01 | 93.8% | 48.7% |
| 4974908 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.50 | 42.0 | 3.05e-01 | 100.0% | 32.5% |