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NC_051623.1__YP_009953586.1__I5H02_gp06__00092

Bact-Vir

NC_051623.1__YP_009953586.1__I5H02_gp06__00092

Identity

Accession:
NC_051623 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anayavirus› Mycobacterium_phage_Marshawn

TaxID: 2652423

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 5.91e-01 95.5% 75.6%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.89e-01 100.0% 73.1%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.04e-01 95.5% 55.0%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 4.43e-01 88.1% 42.8%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.40e-01 88.1% 80.8%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.94e-01 100.0% 94.4%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 4.52e-01 95.5% 66.2%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.43e-01 92.5% 93.7%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.44e-01 88.1% 50.9%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.51e-01 92.5% 93.8%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.15e-01 92.5% 85.3%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.01e-01 80.6% 55.0%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.05e-01 98.5% 83.7%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.84e-01 92.5% 82.1%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 5.06e-01 100.0% 91.4%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.91e-01 94.0% 84.2%
3ic7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.82e-01 92.5% 96.9%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.56e-01 92.5% 90.4%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.35e-01 92.5% 77.6%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.74e-01 97.0% 98.5%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.90e-01 74.6% 75.0%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 42.0 2.88e-01 79.1% 24.9%
1lfwA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 40.0 2.76e-01 85.1% 92.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940141 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.81 72.0 6.99e-01 95.5% 93.2%
5032323 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 67.0 6.16e-01 89.6% 76.5%
None — 0.81 65.0 5.10e-01 88.1% 43.0%
4618641 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.79 68.0 5.22e-01 94.0% 44.1%
3603679 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.76 63.0 5.13e-01 89.6% 51.7%
5059337 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.74 63.0 4.93e-01 94.0% 44.9%
3287501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.53e-01 95.5% 69.4%
4931685 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.74 63.0 4.88e-01 94.0% 44.3%
3963361 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 60.0 5.92e-01 92.5% 84.3%
3290159 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.74 65.0 5.54e-01 100.0% 60.9%
4666422 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 5.74e-01 100.0% 72.6%
3801792 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.72 54.0 5.29e-01 94.0% 74.7%
4864138 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.71 63.0 5.66e-01 100.0% 72.0%
None — 0.70 56.0 5.83e-01 88.1% 95.2%
4981859 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.97e-01 94.0% 96.9%
3943344 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.69 60.0 4.80e-01 100.0% 48.6%
5010519 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.69 60.0 5.35e-01 97.0% 77.9%
1663171 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.69 60.0 5.94e-01 100.0% 94.4%
3700467 101.1.2.97 ↗ alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.68 59.0 5.53e-01 97.0% 89.3%
5065138 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.68 60.0 5.25e-01 98.5% 74.0%
4265597 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 4.20e-01 88.1% 41.2%
4971766 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.61e-01 95.5% 56.3%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 4.96e-01 95.5% 62.9%
4114078 633.6.1.3 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › HpaB 0.67 47.0 3.31e-01 73.1% 74.0%
3726363 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.49e-01 97.0% 62.9%
3965527 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.15e-01 92.5% 76.5%
4302867 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.66 53.0 5.19e-01 89.6% 81.3%
4224500 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.33e-01 98.5% 40.6%
4947507 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 58.0 3.95e-01 100.0% 88.7%
3596473 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.37e-01 94.0% 98.5%
3614788 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.65 55.0 3.52e-01 98.5% 24.2%
4195219 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 53.0 4.64e-01 92.5% 74.0%
3289767 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 41.0 3.89e-01 83.6% 61.3%
3295884 101.1.2.132 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.58 49.0 4.61e-01 98.5% 82.4%
4253581 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.57 46.0 4.21e-01 92.5% 69.5%
5046809 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 4.44e-01 86.6% 100.0%
4362325 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.56 46.0 3.37e-01 92.5% 93.0%
3738680 109.4.1.601 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PLU-1 0.55 47.0 3.24e-01 94.0% 28.4%
4014925 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 3.96e-01 95.5% 61.9%
3336371 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 45.0 3.42e-01 98.5% 67.7%