←Back to structures

NC_051627.1__YP_009953979.1__I5H06_gp07__00094

Bact-Vir

NC_051627.1__YP_009953979.1__I5H06_gp07__00094

Identity

Accession:
NC_051627 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anayavirus› Mycobacterium_phage_SirPhilip

TaxID: 2015824

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
D2 high residues 75-123
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.65 55.0 4.00e-01 100.0% 61.6%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.64 48.0 3.92e-01 81.6% 73.4%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 51.0 3.67e-01 100.0% 39.7%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 47.0 3.86e-01 85.7% 47.3%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.59 43.0 4.03e-01 87.8% 60.6%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 50.0 3.56e-01 100.0% 37.8%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 42.0 3.65e-01 81.6% 50.6%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 42.0 3.99e-01 83.7% 87.1%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.61e-01 95.9% 53.8%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.55 43.0 3.81e-01 89.8% 67.1%
3weeB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 44.0 3.16e-01 98.0% 55.0%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 42.0 2.63e-01 100.0% 81.7%
2nn6D00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 45.0 3.05e-01 100.0% 93.2%
5xbtA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.53 44.0 3.25e-01 100.0% 65.3%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.52 40.0 2.53e-01 93.9% 37.1%
4a3zA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 2.99e-01 89.8% 40.4%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.04e-01 95.9% 37.4%
4nreA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 40.0 3.21e-01 98.0% 54.2%
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.50 39.0 2.87e-01 100.0% 28.1%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 2.92e-01 91.8% 46.9%
3vi3B02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.50 38.0 2.89e-01 100.0% 30.6%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 37.0 3.01e-01 81.6% 50.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.76 59.0 4.38e-01 87.8% 61.5%
3519582 11.1.1.958 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7652 0.67 53.0 4.04e-01 89.8% 41.7%
3704713 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.61 47.0 4.01e-01 98.0% 51.2%
3590662 377.4.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.59 49.0 4.05e-01 93.9% 81.1%
164698 7513.1.1.1 ↗ a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD 0.59 48.0 3.02e-01 100.0% 31.3%
3936178 11.1.1.848 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7585 0.59 44.0 3.07e-01 100.0% 22.6%
3930540 11.1.1.848 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7585 0.57 43.0 3.77e-01 100.0% 50.6%
4169665 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.57 47.0 2.89e-01 100.0% 42.2%
3945230 7513.1.1.1 ↗ a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD 0.56 45.0 2.82e-01 93.9% 38.6%
3832766 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.55 43.0 3.41e-01 85.7% 86.5%
3772640 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.55 44.0 3.40e-01 95.9% 49.6%
4026734 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.55 43.0 2.82e-01 93.9% 50.2%
4989054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.55e-01 89.8% 54.7%
3261977 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 44.0 3.68e-01 89.8% 89.4%
3251163 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 44.0 3.65e-01 89.8% 83.3%
3399251 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 42.0 3.58e-01 91.8% 50.0%
3796177 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 45.0 3.32e-01 100.0% 72.7%
5010338 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 3.24e-01 87.8% 97.4%
3781882 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.53 44.0 2.81e-01 100.0% 84.0%
3686863 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 39.0 3.37e-01 89.8% 47.8%
3417568 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.53 43.0 3.44e-01 91.8% 89.3%
4927903 3156.1.1.3 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind 0.52 41.0 3.10e-01 93.9% 36.1%
3771985 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 39.0 3.39e-01 91.8% 52.2%
5779 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 40.0 3.45e-01 91.8% 50.6%
3399617 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 41.0 3.46e-01 91.8% 81.1%
4076202 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.52 43.0 2.58e-01 100.0% 35.5%
3581700 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 42.0 3.20e-01 100.0% 73.6%
3222896 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 41.0 3.57e-01 91.8% 95.0%
3971916 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 38.0 3.27e-01 91.8% 47.8%
4494265 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 41.0 3.04e-01 100.0% 75.0%
3784367 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 39.0 3.30e-01 100.0% 47.4%
None — 0.50 35.0 2.16e-01 79.6% 11.9%