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NC_051658.1__YP_009957180.1__I5H38_gp86__00086
Bact-VirNC_051658.1__YP_009957180.1__I5H38_gp86__00086
Identity
- Accession:
- NC_051658 ↗
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Taxonomy
TaxID: 2776877
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-53
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.70 | 50.0 | 4.58e-01 | 76.5% | 94.0% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.65 | 46.0 | 4.51e-01 | 96.1% | 68.4% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.65 | 53.0 | 3.26e-01 | 100.0% | 72.2% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 45.0 | 2.77e-01 | 78.4% | 64.3% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 50.0 | 3.53e-01 | 92.2% | 55.0% |
| 1xe0C00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.62 | 45.0 | 3.63e-01 | 78.4% | 46.5% |
| 5e44A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 44.0 | 3.24e-01 | 78.4% | 30.1% |
| 2v8pA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.61 | 44.0 | 3.48e-01 | 78.4% | 95.7% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 42.0 | 3.85e-01 | 72.5% | 100.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.60 | 50.0 | 4.39e-01 | 98.0% | 82.9% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.59 | 42.0 | 3.56e-01 | 76.5% | 63.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 45.0 | 4.34e-01 | 100.0% | 73.8% |
| 1hqz800 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 51.0 | 3.84e-01 | 100.0% | 65.9% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.59 | 44.0 | 3.80e-01 | 88.2% | 89.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.59 | 47.0 | 3.49e-01 | 100.0% | 92.2% |
| 4avaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 42.0 | 3.13e-01 | 78.4% | 30.6% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.58 | 49.0 | 4.25e-01 | 98.0% | 86.7% |
| 2hn1A01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.57 | 45.0 | 3.47e-01 | 96.1% | 85.2% |
| 2pqqA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 40.0 | 3.01e-01 | 78.4% | 30.6% |
| 1uyvA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.57 | 46.0 | 3.04e-01 | 98.0% | 64.1% |
| 3dv8A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 40.0 | 3.04e-01 | 78.4% | 33.8% |
| 4i2oA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 40.0 | 3.16e-01 | 78.4% | 35.6% |
| 3fx3B01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 40.0 | 3.04e-01 | 78.4% | 33.1% |
| 3qqnA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.69e-01 | 100.0% | 66.4% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 39.0 | 3.03e-01 | 78.4% | 35.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 44.0 | 3.82e-01 | 100.0% | 94.6% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.39e-01 | 100.0% | 38.0% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.54 | 42.0 | 4.00e-01 | 92.2% | 72.7% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.53 | 44.0 | 3.30e-01 | 98.0% | 89.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.52 | 42.0 | 3.84e-01 | 100.0% | 69.7% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 2.74e-01 | 84.3% | 98.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 41.0 | 3.56e-01 | 100.0% | 91.5% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 4.05e-01 | 96.1% | 98.3% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.32e-01 | 100.0% | 56.4% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 36.0 | 2.39e-01 | 80.4% | 37.6% |
| 2wliA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.50 | 40.0 | 3.01e-01 | 100.0% | 52.2% |
| 2ijrA01 | 3.30.70.1270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains | 0.50 | 42.0 | 3.52e-01 | 100.0% | 84.5% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.50 | 41.0 | 3.36e-01 | 98.0% | 58.7% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 40.0 | 3.64e-01 | 100.0% | 93.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.82 | 60.0 | 5.27e-01 | 78.4% | 100.0% |
| 3715676 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 56.0 | 4.62e-01 | 76.5% | 44.4% |
| 4962393 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.74 | 58.0 | 6.17e-01 | 96.1% | 95.6% |
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.72 | 51.0 | 4.97e-01 | 76.5% | 69.1% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.72 | 52.0 | 4.97e-01 | 96.1% | 66.7% |
| 3287985 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.69 | 59.0 | 3.70e-01 | 100.0% | 22.5% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.67 | 57.0 | 3.51e-01 | 100.0% | 48.1% |
| 3594014 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.66 | 49.0 | 3.25e-01 | 84.3% | 42.1% |
| 3918990 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 56.0 | 3.07e-01 | 100.0% | 12.4% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.63 | 53.0 | 5.11e-01 | 100.0% | 88.3% |
| 3593360 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 55.0 | 4.56e-01 | 98.0% | 97.8% |
| 4927165 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.62 | 48.0 | 4.76e-01 | 100.0% | 80.0% |
| 3941506 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.62 | 42.0 | 2.58e-01 | 76.5% | 10.7% |
| 4296471 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.62 | 51.0 | 4.65e-01 | 94.1% | 97.1% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.62 | 53.0 | 4.19e-01 | 100.0% | 48.2% |
| 5011939 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.62 | 52.0 | 3.89e-01 | 96.1% | 45.4% |
| 2529893 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.62 | 43.0 | 3.95e-01 | 74.5% | 100.0% |
| 4028559 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.62 | 46.0 | 4.78e-01 | 98.0% | 95.6% |
| 164668 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.61 | 44.0 | 3.50e-01 | 78.4% | 94.8% |
| 1734768 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.61 | 48.0 | 4.66e-01 | 100.0% | 75.9% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 46.0 | 4.64e-01 | 94.1% | 86.0% |
| 3484685 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.60 | 51.0 | 3.87e-01 | 100.0% | 66.2% |
| 5021275 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 46.0 | 3.73e-01 | 90.2% | 80.0% |
| 3975705 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.58 | 40.0 | 4.08e-01 | 76.5% | 88.0% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.56 | 39.0 | 4.04e-01 | 76.5% | 97.8% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.56 | 39.0 | 4.06e-01 | 74.5% | 95.6% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.56 | 39.0 | 4.03e-01 | 76.5% | 97.8% |
| 5047755 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.56 | 47.0 | 3.54e-01 | 100.0% | 73.6% |
| 3640834 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.55 | 41.0 | 3.28e-01 | 100.0% | 37.2% |
| 3428945 | 7581.1.1.25 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C | 0.55 | 41.0 | 2.87e-01 | 88.2% | 54.8% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.55 | 42.0 | 3.67e-01 | 92.2% | 96.7% |
| 3590261 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.54 | 44.0 | 4.13e-01 | 100.0% | 77.9% |
| 5016960 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 36.0 | 3.73e-01 | 70.6% | 100.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.54 | 42.0 | 3.66e-01 | 94.1% | 98.9% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.53 | 42.0 | 4.23e-01 | 92.2% | 94.0% |
| 4951022 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 36.0 | 3.48e-01 | 72.5% | 95.0% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.52 | 42.0 | 3.85e-01 | 100.0% | 68.8% |
| 3217191 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.52 | 38.0 | 2.91e-01 | 86.3% | 87.6% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.51 | 40.0 | 3.74e-01 | 100.0% | 68.0% |
| 3581513 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 40.0 | 3.62e-01 | 96.1% | 88.7% |
| 3283289 | 304.163.1.4 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF30808 | 0.51 | 38.0 | 3.66e-01 | 92.2% | 100.0% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.50 | 37.0 | 3.78e-01 | 92.2% | 90.0% |