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NC_051665.1__YP_009957877.1__I5H45_gp056__00056

Bact-Vir

NC_051665.1__YP_009957877.1__I5H45_gp056__00056

Identity

Accession:
NC_051665 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Harley

TaxID: 2282909

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-84
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 46.0 5.20e-01 100.0% 85.5%
3wfdB00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.59 49.0 3.04e-01 93.2% 30.3%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 42.0 3.92e-01 100.0% 60.4%
1nu7D02 1.20.120.760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 0.54 46.0 3.83e-01 94.5% 79.7%
3zgyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 38.0 3.17e-01 91.8% 41.1%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 38.0 2.79e-01 90.4% 25.3%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.54 47.0 3.78e-01 100.0% 52.0%
6vg3B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 45.0 3.40e-01 95.9% 61.4%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.53 36.0 3.19e-01 71.2% 60.9%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 46.0 3.47e-01 100.0% 58.7%
3idpB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 3.37e-01 94.5% 63.7%
6ziwI02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 3.27e-01 94.5% 63.2%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.51 43.0 3.88e-01 100.0% 82.0%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.51 46.0 3.38e-01 100.0% 42.5%
1n5uA04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.51 41.0 3.95e-01 100.0% 77.9%
2qkwB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 3.14e-01 94.5% 85.4%
1szhA02 1.10.150.370 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain 0.50 42.0 4.08e-01 95.9% 98.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3900194 108.1.1.36 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_14 0.67 51.0 5.10e-01 100.0% 78.7%
3701317 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 52.0 4.96e-01 100.0% 76.5%
3992686 108.1.1.131 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › SAPC2_N 0.61 45.0 4.55e-01 100.0% 77.3%
4023023 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 49.0 4.69e-01 95.9% 81.2%
3700536 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.57 48.0 3.66e-01 94.5% 67.8%
4062149 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.57 43.0 3.82e-01 100.0% 55.5%
3464709 632.15.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 0.56 47.0 4.27e-01 100.0% 69.0%
4949602 601.7.1.34 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.55 47.0 4.40e-01 100.0% 83.2%
2442365 101.1.9.79 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_Rv1828 0.54 38.0 3.97e-01 94.5% 79.4%
4192675 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.54 43.0 4.02e-01 100.0% 68.4%
None — 0.54 43.0 3.87e-01 100.0% 62.9%
3239419 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 42.0 3.96e-01 100.0% 71.1%
5025554 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.52 46.0 3.25e-01 100.0% 89.2%
3727319 601.1.1.77 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3176 0.52 45.0 3.42e-01 100.0% 73.5%
3216538 2498.1.1.69 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PIG-S 0.52 42.0 2.97e-01 93.2% 98.9%
3246383 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.52 40.0 4.08e-01 95.9% 92.8%
3654198 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 43.0 2.80e-01 94.5% 41.2%
5047340 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 39.0 3.91e-01 93.2% 85.3%
D2 medium residues 92-161
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.70 61.0 5.03e-01 100.0% 53.9%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 60.0 5.97e-01 100.0% 94.6%
1z6oM00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 59.0 4.22e-01 97.1% 80.1%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 42.0 4.16e-01 70.0% 62.7%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 46.0 3.61e-01 90.0% 92.1%
5jpnB01 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.56 34.0 3.40e-01 71.4% 58.3%
2hg2A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 43.0 2.93e-01 88.6% 40.9%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 47.0 3.61e-01 95.7% 55.1%
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.53 44.0 3.91e-01 94.3% 91.6%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.53 37.0 3.38e-01 72.9% 88.0%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.53 38.0 3.02e-01 75.7% 83.9%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 42.0 3.35e-01 88.6% 87.9%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.51 42.0 3.88e-01 100.0% 71.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599328 616.1.1.6 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Mpo1-like 0.76 51.0 4.64e-01 70.0% 53.3%
3242683 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.65 54.0 5.06e-01 95.7% 85.6%
3731708 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 56.0 4.91e-01 100.0% 91.4%
3200515 5050.1.1.26 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot 0.60 42.0 3.13e-01 72.9% 89.7%
5019279 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.54 46.0 3.21e-01 100.0% 65.8%
D3 medium residues 162-264
PDB