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NC_051668.1__YP_009958209.1__I5H48_gp074__00074

Bact-Vir

NC_051668.1__YP_009958209.1__I5H48_gp074__00074

Identity

Accession:
NC_051668 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Hlubikazi

TaxID: 2767559

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-55
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yxtA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.75 60.0 4.12e-01 92.9% 27.0%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.75 63.0 4.12e-01 92.9% 45.6%
8e9gD01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.73 64.0 3.71e-01 100.0% 17.2%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 4.93e-01 95.2% 63.4%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 4.85e-01 97.6% 58.9%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 4.88e-01 97.6% 60.2%
6lpfA01 1.10.730.20 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › 0.72 60.0 3.90e-01 95.2% 23.3%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 60.0 4.16e-01 95.2% 42.8%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.70 54.0 3.86e-01 90.5% 27.9%
5dcmB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 42.0 3.24e-01 85.7% 25.5%
7oslA02 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.65 51.0 3.84e-01 85.7% 37.0%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.65 38.0 4.05e-01 73.8% 63.9%
1q8rA00 3.30.1330.70 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA 0.65 47.0 3.39e-01 78.6% 30.5%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 3.43e-01 100.0% 24.5%
3ar4A04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.61 44.0 2.73e-01 78.6% 78.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 3.89e-01 97.6% 62.1%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 3.85e-01 81.0% 68.3%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.04e-01 76.2% 60.4%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.03e-01 81.0% 45.9%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.57e-01 97.6% 73.0%
4q0cA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 41.0 2.83e-01 88.1% 41.9%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 39.0 3.68e-01 88.1% 67.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959827 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.80 62.0 3.77e-01 83.3% 15.4%
3604536 2003.1.1.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 0.79 46.0 3.08e-01 73.8% 16.7%
3992169 109.4.1.2609 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_12, TPR_17 0.76 60.0 4.02e-01 88.1% 23.2%
5082662 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.74 66.0 4.16e-01 100.0% 77.1%
5007247 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.73 66.0 4.04e-01 100.0% 60.0%
3781456 5050.1.1.14 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 0.73 58.0 3.56e-01 92.9% 15.4%
3284225 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.66 53.0 4.25e-01 88.1% 50.0%
222300 2485.1.1.13 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N 0.66 40.0 3.22e-01 76.2% 28.7%
2583940 601.7.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas_Csm6_HEPN 0.66 51.0 3.40e-01 85.7% 20.7%
318712 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.65 50.0 3.55e-01 83.3% 31.7%
4942823 7512.1.1.62 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_3 0.64 49.0 3.25e-01 90.5% 19.0%
3960493 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.63 43.0 3.10e-01 85.7% 24.0%
3386828 2488.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › tRNA_m1G_MT 0.62 51.0 3.17e-01 90.5% 18.3%
3421957 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 3.68e-01 83.3% 67.0%
3057652 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.60 47.0 2.78e-01 92.9% 12.2%
3738071 129.1.1.51 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N 0.58 44.0 2.97e-01 85.7% 21.6%
3946198 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 41.0 3.53e-01 88.1% 56.5%
4027159 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.57 40.0 2.92e-01 81.0% 27.0%
5033073 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.56 39.0 3.00e-01 90.5% 32.6%