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NC_051676.1__YP_009958995.1__I5H56_gp042__00042

Bact-Vir

NC_051676.1__YP_009958995.1__I5H56_gp042__00042

Identity

Accession:
NC_051676 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_KristaRAM

TaxID: 2301700

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-128
PDB
Domain cluster: rep: MT701595.1__QPB09713.1__CPT_Shaeky_026__00026__D24-87
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 41.5 1.10e-10 49.5% 93.5%
D2 medium residues 140-256
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09722.16 best Xre_MbcA_ParS_C 24.8 2.30e-05 39.3% 64.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.68 29.0 3.28e-01 81.2% 50.5%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 27.0 3.03e-01 90.6% 60.2%
4l3tA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 36.0 2.81e-01 70.9% 47.9%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 33.0 3.00e-01 93.2% 48.1%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.75e-01 88.9% 85.6%
8b6jb01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 35.0 2.96e-01 70.9% 58.0%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 25.0 3.00e-01 95.7% 68.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990980 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 26.0 2.89e-01 82.1% 46.3%
3608102 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 30.0 3.82e-01 88.0% 77.1%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 29.0 4.06e-01 86.3% 96.4%
4937350 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 25.0 3.26e-01 81.2% 66.2%
4946320 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 40.0 3.84e-01 94.0% 63.7%
3938884 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 29.0 3.06e-01 91.5% 54.3%
3462235 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 24.0 2.84e-01 82.9% 55.0%
3923465 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 29.0 3.08e-01 91.5% 56.2%
3255739 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.53 29.0 3.56e-01 95.7% 87.1%
3494009 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 27.0 3.09e-01 91.5% 63.3%
5081728 3172.1.1.0 ↗ a+b two layers › Uncharacterized protein gp49 › Uncharacterized protein gp49 › Uncharacterized protein gp49 0.53 25.0 3.16e-01 81.2% 76.9%
3515632 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 28.0 2.78e-01 91.5% 48.3%
4640369 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 28.0 3.01e-01 91.5% 58.1%
3490957 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 27.0 3.23e-01 91.5% 74.7%
4024062 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 29.0 3.59e-01 89.7% 87.8%
3761138 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 28.0 2.87e-01 92.3% 53.9%
3410286 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 35.0 3.88e-01 86.3% 87.4%
3585861 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 31.0 2.98e-01 96.6% 50.0%
4297447 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 31.0 2.97e-01 94.9% 50.0%
3169095 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.50 29.0 3.39e-01 89.7% 78.8%
3937910 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 27.0 3.04e-01 91.5% 67.1%