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NC_051682.1__YP_009959637.1__I5H62_gp66__00066
Bact-VirNC_051682.1__YP_009959637.1__I5H62_gp66__00066
Identity
- Accession:
- NC_051682 ↗
- Kingdom:
- phage
Quality
60.2
mean pLDDT
Taxonomy
TaxID: 2163593
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 72-112
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24212.2 best | DUF7433 | 67.5 | 8.50e-19 | 90.2% | 72.5% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.72 | 54.0 | 3.76e-01 | 78.0% | 56.0% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.71 | 53.0 | 3.74e-01 | 80.5% | 56.0% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.69 | 57.0 | 3.92e-01 | 95.1% | 28.2% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.68 | 44.0 | 3.34e-01 | 95.1% | 29.7% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.68 | 58.0 | 3.62e-01 | 97.6% | 95.9% |
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 58.0 | 3.94e-01 | 95.1% | 77.4% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.68 | 55.0 | 4.68e-01 | 90.2% | 78.8% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.67 | 55.0 | 4.44e-01 | 95.1% | 50.0% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.65 | 50.0 | 3.89e-01 | 85.4% | 76.6% |
| 4uijA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.65 | 48.0 | 3.52e-01 | 78.0% | 51.9% |
| 1u0tB01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.65 | 37.0 | 2.52e-01 | 100.0% | 15.8% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.64 | 52.0 | 4.42e-01 | 92.7% | 59.2% |
| 6zhhA01 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.63 | 55.0 | 3.61e-01 | 100.0% | 96.1% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.61 | 52.0 | 3.64e-01 | 100.0% | 47.9% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.61 | 54.0 | 3.60e-01 | 100.0% | 43.0% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 49.0 | 4.14e-01 | 87.8% | 90.9% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.58 | 40.0 | 3.71e-01 | 73.2% | 54.5% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 42.0 | 3.58e-01 | 82.9% | 95.5% |
| 2yt4A01 | 3.30.160.590 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 39.0 | 4.15e-01 | 78.0% | 97.1% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 44.0 | 3.22e-01 | 92.7% | 59.3% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.44e-01 | 80.5% | 80.3% |
| 1pmtA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 41.0 | 3.13e-01 | 82.9% | 84.0% |
| 3lrtB01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 2.90e-01 | 92.7% | 45.5% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.30e-01 | 82.9% | 77.6% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.51 | 43.0 | 3.28e-01 | 92.7% | 60.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3251564 | 2002.1.1.234 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 | 0.77 | 60.0 | 3.37e-01 | 100.0% | 7.7% |
| 3287147 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.76 | 64.0 | 4.20e-01 | 100.0% | 22.9% |
| 3921782 | 207.1.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 | 0.75 | 44.0 | 2.62e-01 | 90.2% | 9.2% |
| 4008902 | 4268.2.1.20 ↗ | alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA › DUF932 | 0.75 | 63.0 | 4.51e-01 | 92.7% | 73.5% |
| 4380337 | 102.1.3.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › DUF932 | 0.74 | 62.0 | 4.47e-01 | 92.7% | 73.5% |
| 5031058 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.74 | 60.0 | 5.04e-01 | 90.2% | 60.0% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.72 | 64.0 | 4.18e-01 | 100.0% | 33.5% |
| 4813923 | 4967.1.1.14 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb | 0.69 | 45.0 | 4.14e-01 | 85.4% | 51.9% |
| 4928783 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 47.0 | 4.29e-01 | 87.8% | 65.1% |
| 3220832 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.64 | 50.0 | 3.86e-01 | 100.0% | 38.9% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.63 | 53.0 | 4.48e-01 | 95.1% | 57.7% |
| 3926983 | 389.6.1.0 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain | 0.62 | 43.0 | 3.13e-01 | 73.2% | 61.7% |
| 3276546 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.62 | 51.0 | 3.08e-01 | 100.0% | 16.0% |
| 4999722 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 46.0 | 3.72e-01 | 90.2% | 38.9% |
| 2126757 | 170.2.1.1 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p24 | 0.61 | 52.0 | 3.64e-01 | 100.0% | 47.9% |
| 3937632 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.61 | 55.0 | 3.56e-01 | 100.0% | 84.0% |
| 3603150 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.59 | 51.0 | 3.12e-01 | 95.1% | 16.5% |
| 3496221 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 45.0 | 4.15e-01 | 92.7% | 66.7% |
| 3167617 | 4029.1.1.1 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › Sirohm_synth_M | 0.55 | 49.0 | 4.96e-01 | 100.0% | 100.0% |
| 3514894 | 386.1.1.337 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CCDC174_GRSR | 0.55 | 36.0 | 4.05e-01 | 80.5% | 93.3% |
| 3929844 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 36.0 | 3.39e-01 | 85.4% | 53.1% |
| 1238064 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.50 | 43.0 | 3.48e-01 | 100.0% | 50.0% |