←Back to structures
NC_051690.1__YP_009960424.1__I5H70_gp49__00049
Bact-VirNC_051690.1__YP_009960424.1__I5H70_gp49__00049
Identity
- Accession:
- NC_051690 ↗
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Taxonomy
TaxID: 2652404
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-60
Domain cluster:
rep: KM101122.1__AIK69149.1__PBI_HADES_42__00042__D19-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09722.16 best | Xre_MbcA_ParS_C | 26.6 | 6.80e-06 | 84.5% | 82.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gkuB04 | 3.30.56.120 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.69 | 49.0 | 4.56e-01 | 100.0% | 60.3% |
| 1vbiA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.63 | 50.0 | 4.17e-01 | 98.3% | 50.5% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.56 | 47.0 | 3.91e-01 | 96.6% | 94.4% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.56 | 49.0 | 4.53e-01 | 100.0% | 86.8% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 36.0 | 3.27e-01 | 70.7% | 59.5% |
| 1sgmA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 37.0 | 2.71e-01 | 81.0% | 32.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2453093 | 101.1.4.13 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C | 0.97 | 92.0 | 7.09e-01 | 98.3% | 51.4% |
| 4218671 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.95 | 87.0 | 6.36e-01 | 96.6% | 43.7% |
| 5040644 | 101.1.4.93 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre-like-HTH | 0.94 | 81.0 | 6.04e-01 | 91.4% | 43.1% |
| 3962562 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.91 | 75.0 | 6.00e-01 | 91.4% | 48.6% |
| 4116978 | 101.30.1.1 ↗ | alpha arrays › HTH › Rv2175c › Rv2175c › Xre_MbcA_ParS_C | 0.90 | 78.0 | 7.52e-01 | 93.1% | 86.2% |
| 3952322 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.90 | 77.0 | 6.24e-01 | 93.1% | 51.4% |
| 4555054 | 101.1.4.14 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C,Xre-like-HTH | 0.85 | 70.0 | 5.59e-01 | 89.7% | 53.6% |
| 4311945 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.77 | 66.0 | 5.08e-01 | 98.3% | 43.1% |
| 3682972 | 3161.1.1.1 ↗ | alpha duplicates or obligate multimers › LOB domain › LOB domain › LOB domain › LOB | 0.66 | 50.0 | 4.12e-01 | 82.8% | 73.6% |
| 4867504 | 109.3.1.130 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TRPM2 | 0.66 | 46.0 | 3.39e-01 | 74.1% | 28.6% |
| 4462712 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.65 | 50.0 | 4.99e-01 | 91.4% | 81.7% |
| 5053405 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 39.0 | 2.56e-01 | 79.3% | 18.0% |
| 4015614 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 46.0 | 3.60e-01 | 100.0% | 85.4% |
| 4988252 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.52 | 43.0 | 3.46e-01 | 93.1% | 93.9% |