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NC_051693.1__YP_009960764.1__I5H73_gp078__00078
Bact-VirNC_051693.1__YP_009960764.1__I5H73_gp078__00078
Identity
- Accession:
- NC_051693 ↗
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Taxonomy
TaxID: 2079284
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 87-154
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ybxA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.70 | 56.0 | 5.02e-01 | 85.3% | 74.7% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.66 | 56.0 | 3.92e-01 | 95.6% | 92.0% |
| 4xomB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 50.0 | 3.58e-01 | 83.8% | 53.2% |
| 1oypA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.65 | 55.0 | 3.92e-01 | 95.6% | 88.8% |
| 6kzdA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.63 | 40.0 | 2.90e-01 | 94.1% | 24.4% |
| 4rnyA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 51.0 | 4.01e-01 | 95.6% | 89.1% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 50.0 | 4.01e-01 | 95.6% | 51.8% |
| 2nn6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.59 | 52.0 | 3.42e-01 | 100.0% | 80.3% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 50.0 | 4.46e-01 | 100.0% | 73.2% |
| 1wd5A02 | 3.30.1310.20 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › PRTase-like | 0.56 | 42.0 | 4.33e-01 | 83.8% | 100.0% |
| 2e50B02 | 3.30.1120.90 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein | 0.55 | 42.0 | 3.70e-01 | 86.8% | 58.6% |
| 3memA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 44.0 | 2.87e-01 | 86.8% | 49.7% |
| 2je6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 46.0 | 3.23e-01 | 100.0% | 91.2% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 48.0 | 3.33e-01 | 98.5% | 83.5% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.54 | 39.0 | 3.84e-01 | 100.0% | 73.6% |
| 4o1pD02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 45.0 | 3.08e-01 | 94.1% | 37.5% |
| 4isyC01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 42.0 | 3.47e-01 | 100.0% | 45.6% |
| 1jb7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 45.0 | 3.44e-01 | 98.5% | 96.0% |
| 3mz1B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 47.0 | 4.03e-01 | 100.0% | 96.2% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 29.0 | 2.92e-01 | 82.4% | 52.2% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 39.0 | 3.03e-01 | 83.8% | 93.9% |
| 1o6zA01 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 40.0 | 3.07e-01 | 85.3% | 99.4% |
| 2c0nA00 | 3.90.550.40 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.50 | 34.0 | 2.45e-01 | 94.1% | 24.7% |
| 1ve3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 40.0 | 2.85e-01 | 88.2% | 43.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4236240 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.73 | 58.0 | 5.14e-01 | 85.3% | 69.5% |
| 4145290 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.72 | 59.0 | 5.23e-01 | 88.2% | 74.7% |
| 4391637 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.72 | 57.0 | 5.19e-01 | 85.3% | 73.3% |
| 4637448 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.72 | 56.0 | 5.02e-01 | 83.8% | 70.5% |
| 4213489 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.72 | 57.0 | 5.06e-01 | 85.3% | 71.6% |
| 3956336 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.70 | 56.0 | 4.56e-01 | 85.3% | 60.8% |
| 4047302 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.69 | 56.0 | 4.96e-01 | 88.2% | 70.0% |
| 4343474 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.69 | 55.0 | 4.91e-01 | 85.3% | 71.6% |
| 3589881 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.69 | 54.0 | 4.81e-01 | 83.8% | 64.2% |
| 4139864 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.69 | 54.0 | 4.75e-01 | 83.8% | 62.2% |
| 4068261 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.69 | 54.0 | 5.54e-01 | 83.8% | 93.8% |
| 4124819 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.68 | 52.0 | 4.86e-01 | 82.4% | 71.8% |
| 4143468 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.68 | 53.0 | 4.82e-01 | 83.8% | 66.7% |
| 3954913 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 53.0 | 4.46e-01 | 88.2% | 53.0% |
| 4197141 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.64 | 53.0 | 4.62e-01 | 88.2% | 78.0% |
| 3517944 | 247.1.1.23 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2+Lactamase_B_4 | 0.62 | 45.0 | 2.56e-01 | 76.5% | 9.3% |
| 3560443 | 220.1.1.120 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd | 0.60 | 53.0 | 4.02e-01 | 100.0% | 70.9% |
| 3612767 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 51.0 | 3.68e-01 | 97.1% | 34.2% |
| 4025560 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.59 | 51.0 | 4.51e-01 | 100.0% | 67.4% |
| 3654301 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.59 | 50.0 | 3.74e-01 | 97.1% | 73.3% |
| 3301602 | 5.1.2.41 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 | 0.58 | 46.0 | 3.45e-01 | 88.2% | 62.2% |
| 4973622 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.58 | 44.0 | 4.24e-01 | 94.1% | 73.8% |
| 3773744 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.57 | 50.0 | 3.84e-01 | 100.0% | 71.5% |
| 3826256 | 101.1.2.303 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPC5 | 0.57 | 45.0 | 4.12e-01 | 85.3% | 100.0% |
| 5014721 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 40.0 | 3.73e-01 | 94.1% | 58.9% |
| 5058484 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 38.0 | 3.84e-01 | 79.4% | 72.9% |
| 4659650 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 38.0 | 3.58e-01 | 77.9% | 63.3% |
| 3539273 | 220.1.1.120 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd | 0.50 | 40.0 | 3.15e-01 | 86.8% | 97.9% |
| 3777040 | 220.1.1.120 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd | 0.50 | 43.0 | 3.38e-01 | 97.1% | 92.0% |
D2
medium
residues 160-215