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NC_051724.1__YP_009963977.1__I5I04_gp060__00060

Bact-Vir

NC_051724.1__YP_009963977.1__I5I04_gp060__00060

Identity

Accession:
NC_051724 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Avanivirus› Mycobacterium_phage_Zapner

TaxID: 1486474

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-54
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.85 75.0 6.13e-01 100.0% 87.5%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.85 75.0 6.95e-01 100.0% 85.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.84 74.0 5.77e-01 100.0% 48.2%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.83 74.0 4.69e-01 100.0% 21.5%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 73.0 7.06e-01 100.0% 96.6%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.82 68.0 5.73e-01 100.0% 55.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 73.0 6.97e-01 100.0% 93.3%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.82 71.0 5.18e-01 100.0% 48.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 72.0 6.76e-01 100.0% 98.4%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 72.0 6.50e-01 100.0% 76.1%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.81 68.0 5.95e-01 100.0% 61.7%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.81 71.0 5.58e-01 100.0% 58.2%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 70.0 6.43e-01 98.1% 76.5%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 63.0 4.64e-01 100.0% 33.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.78 68.0 6.33e-01 100.0% 98.5%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.78 66.0 6.25e-01 94.2% 80.3%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.77 66.0 5.74e-01 100.0% 62.7%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 65.0 4.70e-01 98.1% 81.4%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 67.0 6.35e-01 100.0% 95.2%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.76 64.0 5.90e-01 100.0% 77.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 65.0 6.21e-01 100.0% 85.5%
1jkvA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 62.0 4.29e-01 100.0% 25.9%
7e84A02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.75 65.0 4.80e-01 100.0% 42.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.74 64.0 5.97e-01 100.0% 80.3%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 62.0 5.58e-01 100.0% 67.6%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.74 64.0 5.34e-01 100.0% 55.8%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.74 63.0 4.81e-01 100.0% 85.2%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.74 62.0 4.68e-01 94.2% 79.4%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.74 64.0 4.94e-01 100.0% 45.0%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 63.0 5.40e-01 100.0% 59.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 60.0 5.92e-01 100.0% 91.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.72 58.0 5.32e-01 96.2% 67.6%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.72 59.0 5.06e-01 100.0% 56.0%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.71 60.0 5.52e-01 96.2% 71.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 61.0 4.92e-01 100.0% 49.1%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.71 59.0 5.22e-01 100.0% 64.6%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.71 61.0 5.26e-01 100.0% 62.4%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.71 55.0 4.46e-01 84.6% 50.5%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 58.0 4.80e-01 100.0% 51.5%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 56.0 4.63e-01 98.1% 49.5%
4fppB01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.67 55.0 5.10e-01 98.1% 88.7%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.66 52.0 3.63e-01 94.2% 26.1%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.66 48.0 4.21e-01 76.9% 60.0%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 52.0 4.98e-01 98.1% 82.3%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 52.0 3.41e-01 100.0% 34.4%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.62 50.0 4.92e-01 92.3% 83.9%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.61 53.0 4.58e-01 100.0% 64.7%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.60 51.0 4.96e-01 94.2% 91.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3564754 604.1.1.96 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Bap31 0.85 77.0 5.60e-01 100.0% 38.5%
4286404 3755.1.1.14 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › T3SSipB 0.85 75.0 5.12e-01 100.0% 28.9%
3575793 632.8.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.84 75.0 5.82e-01 100.0% 47.3%
4028999 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.84 74.0 6.91e-01 100.0% 96.9%
3984493 325.1.7.28 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › HH_YBHG 0.83 73.0 5.46e-01 100.0% 43.1%
3969543 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 73.0 6.51e-01 100.0% 74.7%
4009031 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 74.0 6.25e-01 100.0% 65.9%
4642325 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.83 73.0 5.42e-01 100.0% 75.4%
3980428 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.83 70.0 6.24e-01 96.2% 100.0%
4541195 3755.3.1.470 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › T3SSipB 0.83 72.0 5.41e-01 100.0% 70.0%
3906467 1008.1.1.106 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C 0.83 73.0 6.07e-01 100.0% 57.8%
None — 0.82 72.0 5.38e-01 100.0% 43.1%
3737517 3560.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.82 71.0 4.82e-01 100.0% 28.9%
3945665 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.81 70.0 6.36e-01 98.1% 74.3%
3718408 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.81 70.0 5.54e-01 100.0% 47.3%
3976441 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.81 71.0 5.35e-01 100.0% 41.6%
3355429 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.81 70.0 6.58e-01 100.0% 90.8%
4115372 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 69.0 5.50e-01 100.0% 53.6%
3174647 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.81 69.0 6.35e-01 100.0% 85.7%
4960850 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.79 68.0 6.54e-01 100.0% 86.7%
3967123 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 67.0 5.90e-01 100.0% 70.0%
3935140 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.79 65.0 4.50e-01 100.0% 27.2%
3531576 192.13.1.0 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.79 65.0 5.92e-01 100.0% 68.6%
4000502 192.8.1.305 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › VPS18_RING_C 0.78 69.0 5.42e-01 100.0% 48.2%
3691039 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 68.0 5.96e-01 100.0% 65.0%
3377936 3922.1.1.173 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF3493 0.78 67.0 5.81e-01 100.0% 62.4%
3679787 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 68.0 4.26e-01 100.0% 19.3%
4983440 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.78 67.0 5.67e-01 100.0% 68.9%
4028368 109.40.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain 0.78 63.0 4.58e-01 100.0% 31.6%
1070258 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 65.0 6.18e-01 100.0% 79.4%
3531423 5106.1.1.14 ↗ extended segments › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › TMEM174 0.77 67.0 6.60e-01 98.1% 100.0%
3897805 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.76 65.0 4.58e-01 100.0% 30.6%
3917098 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 65.0 3.75e-01 100.0% 10.1%
4214499 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 64.0 5.88e-01 100.0% 87.1%
3478267 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.75 63.0 5.63e-01 100.0% 66.7%
3785816 4.1.1.369 ↗ beta barrels › SH3 › SH3 › SH3 › Not3 0.75 64.0 4.77e-01 100.0% 54.3%
3575290 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 61.0 5.16e-01 100.0% 63.2%
4954843 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.73 59.0 5.03e-01 100.0% 53.7%
3265664 4336.1.1.0 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like 0.72 61.0 5.17e-01 98.1% 57.8%
4450827 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 62.0 5.91e-01 94.2% 86.7%
3175481 1065.1.1.0 ↗ alpha bundles › SPX domain › SPX domain › SPX domain 0.71 58.0 4.17e-01 100.0% 28.9%
4028334 2004.1.1.505 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 0.71 59.0 3.70e-01 98.1% 19.4%
3354508 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 60.0 4.15e-01 100.0% 28.3%
1566346 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 58.0 5.38e-01 100.0% 78.9%
4967770 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.69 61.0 4.12e-01 100.0% 31.6%
3589789 5042.1.1.1 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.60 49.0 4.71e-01 94.2% 83.3%
D2 medium residues 68-129
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 46.0 3.44e-01 71.0% 64.0%
1vp2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.64 50.0 3.61e-01 87.1% 48.1%
5oyjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 4.11e-01 80.6% 73.7%
1bcpA00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.63 49.0 3.44e-01 88.7% 47.3%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.62 48.0 4.06e-01 85.5% 97.2%
4c4aA04 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.62 53.0 4.06e-01 100.0% 98.8%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 3.97e-01 85.5% 91.9%
5t89X04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 4.13e-01 83.9% 79.6%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 41.0 4.11e-01 75.8% 68.8%
1oqwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.60 47.0 3.68e-01 90.3% 70.1%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.81e-01 83.9% 77.1%
5c33A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 45.0 3.31e-01 83.9% 62.2%
1uyjA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.58 47.0 3.28e-01 88.7% 82.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 39.0 3.87e-01 71.0% 69.2%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.80e-01 83.9% 84.2%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 39.0 2.60e-01 80.6% 19.2%
6x6uA01 3.60.9.10 Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain 0.56 45.0 3.27e-01 96.8% 46.4%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.02e-01 96.8% 84.1%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.55e-01 85.5% 81.7%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 45.0 4.06e-01 100.0% 69.9%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.50e-01 80.6% 79.2%
2e1qC05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.54 40.0 3.42e-01 85.5% 61.0%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.54 45.0 3.78e-01 98.4% 62.3%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 46.0 3.53e-01 100.0% 56.2%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.56e-01 87.1% 87.4%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 39.0 3.34e-01 83.9% 81.5%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.60e-01 91.9% 36.4%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 43.0 2.73e-01 100.0% 24.6%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 39.0 3.57e-01 88.7% 95.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.51 45.0 2.82e-01 100.0% 22.6%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.51 44.0 2.75e-01 100.0% 30.4%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 38.0 3.26e-01 85.5% 64.6%
1accA02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.50 41.0 3.08e-01 100.0% 71.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.50 36.0 2.70e-01 77.4% 45.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012748 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.67 59.0 3.74e-01 100.0% 25.2%
3660646 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.63 49.0 3.48e-01 90.3% 43.3%
6731 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.62 48.0 4.06e-01 85.5% 97.2%
3367730 5.1.1.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › FBA_1 0.62 47.0 3.56e-01 85.5% 47.9%
3273903 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.62 53.0 3.35e-01 100.0% 28.6%
4770305 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.61 43.0 4.31e-01 74.2% 73.4%
3994010 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.61 45.0 3.45e-01 79.0% 62.1%
4771028 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.60 41.0 4.09e-01 74.2% 69.8%
4193845 5.1.4.279 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF26550 0.59 46.0 2.88e-01 85.5% 26.9%
3710451 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.59 44.0 2.77e-01 80.6% 69.4%
4424281 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.59 45.0 3.64e-01 87.1% 80.7%
3607869 2008.1.1.146 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N 0.59 44.0 2.81e-01 80.6% 77.7%
2391612 319.2.1.1 ↗ beta sandwiches › HSP20-like › Pre-mRNA-splicing factor PRP11 C-terminal domain › Pre-mRNA-splicing factor PRP11 C-terminal domain › SF3A2 0.59 40.0 3.36e-01 72.6% 41.9%
4514946 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 42.0 2.95e-01 75.8% 24.1%
4325993 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.58 48.0 2.98e-01 91.9% 16.9%
2490256 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.57 39.0 3.85e-01 71.0% 68.2%
3452042 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 40.0 4.22e-01 74.2% 85.5%
3939740 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 40.0 3.30e-01 74.2% 41.7%
5059335 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.56 45.0 3.80e-01 90.3% 98.2%
3836527 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.56 45.0 3.53e-01 91.9% 89.0%
3973908 881.1.1.25 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.56 49.0 3.71e-01 100.0% 45.8%
4081795 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.56 50.0 3.11e-01 100.0% 95.3%
None — 0.56 44.0 2.82e-01 87.1% 70.8%
3934129 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 40.0 2.83e-01 77.4% 24.4%
3656126 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.55 44.0 3.54e-01 93.5% 93.6%
3622981 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.55 50.0 3.05e-01 100.0% 93.7%
3560459 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.55 37.0 4.17e-01 100.0% 97.8%
3367557 4099.1.1.41 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FmiP_Thoc5 0.54 48.0 3.74e-01 100.0% 61.5%
4935307 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 49.0 4.48e-01 100.0% 95.0%
3671367 5.1.4.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.53 45.0 2.86e-01 100.0% 24.8%
5018204 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.53 41.0 3.19e-01 93.5% 41.8%
5019409 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 2.81e-01 100.0% 18.4%
3570911 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.52 43.0 2.78e-01 100.0% 45.0%
3644862 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 2.84e-01 100.0% 23.5%
1688895 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.52 44.0 3.08e-01 91.9% 87.2%
4416182 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.52 42.0 3.71e-01 100.0% 89.5%
None — 0.52 43.0 2.54e-01 91.9% 35.5%
3499841 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 40.0 3.69e-01 95.2% 77.8%
3967418 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.50 39.0 2.41e-01 93.5% 36.3%
5069333 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.50 39.0 2.44e-01 87.1% 46.4%
3853561 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.50 37.0 3.40e-01 83.9% 81.1%
3500359 9.1.1.45 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C 0.50 41.0 3.16e-01 100.0% 82.8%