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NC_051725.1__YP_009964092.1__I5J35_gp67__00067

Bact-Vir

NC_051725.1__YP_009964092.1__I5J35_gp67__00067

Identity

Accession:
NC_051725 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trigintaduovirus› Mycobacterium_phage_Rem711

TaxID: 2079285

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-85
PDB
Domain cluster: rep: NC_053210.1__YP_010001435.1__J1597_gp55__00055__D7-55
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24623.3 best Phage_zn_bind_8 32.7 6.80e-08 97.1% 79.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ei3A04 1.10.150.910 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 47.0 4.42e-01 89.9% 88.2%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 42.0 3.49e-01 79.7% 68.3%
1r76A00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 38.0 2.40e-01 72.5% 14.6%
3plwA00 3.30.40.190 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.54 42.0 3.66e-01 85.5% 95.5%
3khxA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 38.0 2.70e-01 76.8% 92.2%
1gt6A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.05e-01 97.1% 99.3%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.52 39.0 2.89e-01 79.7% 31.1%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.52 35.0 2.61e-01 89.9% 25.7%
4ppuA00 1.10.590.10 Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic 0.51 44.0 2.93e-01 92.8% 52.7%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.51 39.0 2.88e-01 84.1% 93.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4086750 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.62 51.0 4.37e-01 98.6% 55.7%
3451111 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 3.10e-01 100.0% 30.7%
3803974 3289.1.1.0 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 0.59 43.0 2.35e-01 76.8% 20.6%
3221645 5001.1.1.27 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre 0.59 52.0 3.45e-01 100.0% 99.7%
4991832 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.57 36.0 2.61e-01 76.8% 22.0%
4918 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.55 46.0 4.01e-01 89.9% 67.0%
3298003 101.1.1.20 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.55 45.0 4.10e-01 91.3% 80.9%
4074457 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.55 48.0 3.96e-01 97.1% 65.6%
3664992 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.53 39.0 2.86e-01 79.7% 29.5%
4966180 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 2.95e-01 91.3% 35.7%
3627702 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 37.0 2.40e-01 73.9% 27.4%
4990636 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 40.0 3.21e-01 79.7% 71.5%
3670166 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.52 46.0 2.86e-01 100.0% 84.0%
3595465 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 2.41e-01 100.0% 8.8%
4011223 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 36.0 2.41e-01 76.8% 19.2%
3854701 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.51 46.0 3.21e-01 100.0% 87.7%
3946506 7011.1.1.6 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.50 43.0 2.71e-01 97.1% 27.6%
3727728 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.50 41.0 2.79e-01 92.8% 96.8%