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NC_051726.1__YP_009964120.1__I5J36_gp10__00010

Bact-Vir

NC_051726.1__YP_009964120.1__I5J36_gp10__00010

Identity

Accession:
NC_051726 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bernalvirus› Mycobacterium_phage_Mendokysei

TaxID: 2099637

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-95
PDB
Domain cluster: rep: OR296439.1__WLZ21161.1__C341T2LP_00015__00015__D12-109
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.75 69.0 6.21e-01 100.0% 93.9%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 59.0 5.25e-01 100.0% 62.6%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 56.0 5.30e-01 98.8% 72.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 61.0 4.59e-01 100.0% 66.7%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 5.10e-01 100.0% 84.1%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 4.71e-01 97.7% 69.4%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 56.0 5.22e-01 100.0% 79.0%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 56.0 4.79e-01 100.0% 77.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.22e-01 100.0% 68.6%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.72e-01 100.0% 88.0%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 4.41e-01 100.0% 74.1%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 54.0 4.67e-01 100.0% 80.1%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 52.0 4.11e-01 100.0% 70.7%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 52.0 4.67e-01 100.0% 72.6%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 4.12e-01 100.0% 84.9%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 49.0 3.57e-01 97.7% 78.6%
1i7qA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 48.0 2.98e-01 97.7% 85.3%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.47e-01 70.9% 57.4%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 39.0 3.35e-01 89.5% 46.8%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.42e-01 70.9% 70.4%
4k6nA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.53 37.0 3.10e-01 74.4% 49.7%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 46.0 4.26e-01 98.8% 79.6%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.50 39.0 3.02e-01 87.2% 54.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169594 1.1.13.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.75 69.0 6.21e-01 100.0% 93.9%
4169622 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.72 59.0 4.36e-01 98.8% 35.0%
3532116 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 57.0 4.29e-01 98.8% 35.8%
398505 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.69 57.0 4.23e-01 100.0% 34.6%
3647453 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.67 60.0 4.23e-01 98.8% 43.1%
3843527 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.66 58.0 4.26e-01 98.8% 36.9%
3364575 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 59.0 4.78e-01 100.0% 71.3%
4600945 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 56.0 4.15e-01 97.7% 36.8%
3649347 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 57.0 4.82e-01 97.7% 64.8%
3646691 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 55.0 4.47e-01 100.0% 74.1%
3418278 1.1.9.8 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › YTH 0.62 48.0 3.79e-01 83.7% 53.5%
4119987 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 53.0 3.89e-01 100.0% 36.0%
3994249 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 54.0 4.52e-01 100.0% 66.5%
3744150 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.61 54.0 4.26e-01 100.0% 69.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 33.0 3.32e-01 98.8% 52.2%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 38.0 3.60e-01 100.0% 54.3%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 32.0 3.17e-01 98.8% 49.5%
3413788 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 49.0 4.23e-01 100.0% 77.9%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 33.0 3.74e-01 98.8% 83.3%
5011928 206.1.3.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.55 43.0 3.10e-01 88.4% 65.6%
3991461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 4.14e-01 100.0% 74.7%
None — 0.53 43.0 3.02e-01 90.7% 64.8%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 30.0 3.38e-01 100.0% 75.0%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.52 33.0 3.13e-01 100.0% 52.4%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.51 33.0 3.53e-01 100.0% 76.0%
3254120 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 45.0 3.75e-01 100.0% 67.1%
3753133 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 40.0 2.80e-01 89.5% 48.8%
3594386 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 33.0 3.23e-01 100.0% 58.9%
3552373 10.2.1.31 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.51 34.0 3.14e-01 73.3% 52.7%