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NC_051735.1__YP_009964868.1__I5J46_gp66__00066

Bact-Vir

NC_051735.1__YP_009964868.1__I5J46_gp66__00066

Identity

Accession:
NC_051735 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fishburnevirus› Mycobacterium_phage_FirstPlacePfu

TaxID: 2572533

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-85
PDB
Domain cluster: rep: NC_048072.1__YP_009812950.1__HOU27_gp39__00039__D10-91
D2 medium residues 232-290
PDB
Domain cluster: rep: MK932884.1__QDF14853.1__X__00016__D187-239
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 58.0 5.14e-01 100.0% 73.9%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.64 53.0 5.12e-01 98.3% 84.5%
2xgjB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 46.0 3.17e-01 81.4% 32.9%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.60 50.0 5.05e-01 96.6% 100.0%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 39.0 4.09e-01 72.9% 90.2%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.57 48.0 4.48e-01 98.3% 86.8%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.57 48.0 4.19e-01 94.9% 65.6%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 38.0 3.10e-01 71.2% 49.2%
1b8dA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.56 44.0 3.29e-01 88.1% 73.2%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.34e-01 100.0% 91.7%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 37.0 3.60e-01 71.2% 60.3%
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.55 40.0 3.55e-01 78.0% 58.6%
3m0fA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 46.0 4.20e-01 96.6% 91.1%
3czpA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.80e-01 89.8% 89.3%
5mq1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 39.0 3.25e-01 83.1% 59.3%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.51 36.0 3.54e-01 72.9% 88.7%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 34.0 2.88e-01 71.2% 47.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4255370 6130.1.1.1 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.69 59.0 5.65e-01 100.0% 92.9%
3870903 103.1.1.53 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.66 55.0 5.56e-01 98.3% 91.7%
3913408 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 42.0 3.55e-01 72.9% 43.8%
3813902 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.60 51.0 4.55e-01 100.0% 88.9%
3305039 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 37.0 3.14e-01 76.3% 38.0%
4290005 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.57 41.0 4.22e-01 78.0% 96.4%
3563979 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.57 41.0 3.14e-01 78.0% 84.8%
4025504 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 38.0 3.45e-01 72.9% 60.0%
4462712 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.55 43.0 4.29e-01 100.0% 93.3%
3595326 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.54 40.0 3.88e-01 84.7% 95.7%
3698042 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 38.0 2.58e-01 78.0% 26.1%
4128206 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.52 36.0 3.60e-01 76.3% 84.6%
3746563 3755.3.1.123 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.52 40.0 3.00e-01 84.7% 73.3%
5005238 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 42.0 2.61e-01 100.0% 18.1%
3337878 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.50 43.0 3.54e-01 100.0% 89.6%
3946317 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 34.0 3.31e-01 100.0% 61.4%