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NC_051738.1__YP_009965110.1__I5J49_gp67__00067

Bact-Vir

NC_051738.1__YP_009965110.1__I5J49_gp67__00067

Identity

Accession:
NC_051738 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-69
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 62.0 6.47e-01 100.0% 98.0%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 52.0 5.01e-01 83.9% 64.5%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 53.0 5.35e-01 92.9% 75.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 4.90e-01 100.0% 49.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.44e-01 100.0% 70.8%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.52e-01 98.2% 78.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 49.0 4.51e-01 85.7% 55.4%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.30e-01 100.0% 78.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.10e-01 100.0% 71.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.41e-01 100.0% 69.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.55e-01 100.0% 75.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 60.0 4.45e-01 100.0% 51.0%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.67 58.0 5.15e-01 100.0% 74.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.66 60.0 5.51e-01 100.0% 91.5%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 55.0 5.37e-01 100.0% 87.1%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.55e-01 89.3% 68.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 5.09e-01 100.0% 94.3%
3kewB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.61 42.0 3.08e-01 71.4% 90.3%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 52.0 3.31e-01 100.0% 25.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 49.0 3.37e-01 96.4% 68.2%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.59 51.0 4.22e-01 100.0% 64.4%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.58 46.0 4.35e-01 91.1% 73.9%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 43.0 3.38e-01 82.1% 80.0%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 4.12e-01 89.3% 92.6%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 45.0 4.52e-01 96.4% 87.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 44.0 4.40e-01 100.0% 83.1%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 46.0 3.98e-01 91.1% 94.5%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 39.0 2.87e-01 91.1% 25.8%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 47.0 3.33e-01 100.0% 35.1%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.50e-01 100.0% 76.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 3.61e-01 100.0% 37.1%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 46.0 3.13e-01 96.4% 68.5%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 44.0 4.06e-01 92.9% 70.5%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 45.0 3.19e-01 91.1% 57.9%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 45.0 3.86e-01 92.9% 58.5%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.29e-01 82.1% 67.5%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 40.0 2.73e-01 82.1% 45.0%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.28e-01 94.6% 93.5%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 2.83e-01 100.0% 33.9%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 43.0 3.70e-01 92.9% 54.6%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 43.0 3.02e-01 96.4% 82.9%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 38.0 3.41e-01 96.4% 53.8%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.53 39.0 3.00e-01 80.4% 70.1%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 43.0 3.02e-01 96.4% 80.5%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 4.04e-01 92.9% 83.8%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.52 42.0 3.12e-01 92.9% 61.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 41.0 3.21e-01 89.3% 76.9%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 3.99e-01 92.9% 79.7%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.16e-01 94.6% 84.4%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 3.99e-01 94.6% 82.9%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.52 42.0 3.34e-01 96.4% 57.0%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.20e-01 80.4% 73.3%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.61e-01 96.4% 23.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 2.86e-01 98.2% 36.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4481026 4.1.1.407 beta barrels › SH3 › SH3 › SH3 › PF29661 0.85 63.0 6.14e-01 100.0% 73.3%
5071741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 60.0 5.86e-01 100.0% 76.7%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.77 61.0 5.45e-01 100.0% 62.7%
1567496 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 62.0 6.25e-01 100.0% 86.0%
3270574 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.77 54.0 5.54e-01 92.9% 76.4%
3510786 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 62.0 5.92e-01 100.0% 75.4%
3923639 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.77 56.0 5.34e-01 94.6% 67.2%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 60.0 5.92e-01 100.0% 79.7%
3404925 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 51.0 5.41e-01 80.4% 78.0%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.76 59.0 5.12e-01 100.0% 55.3%
3740208 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 61.0 5.78e-01 100.0% 75.4%
3927367 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.75 54.0 5.02e-01 94.6% 60.0%
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.91e-01 100.0% 85.5%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 58.0 4.95e-01 100.0% 52.2%
3696161 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.75 54.0 5.33e-01 85.7% 71.7%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 60.0 5.43e-01 100.0% 65.3%
3797640 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 52.0 5.24e-01 94.6% 74.5%
3699995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.70e-01 100.0% 72.9%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 64.0 4.40e-01 100.0% 29.4%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.38e-01 100.0% 65.3%
3766659 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 59.0 5.77e-01 100.0% 81.7%
3399675 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.73 53.0 5.05e-01 94.6% 66.2%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 63.0 5.16e-01 100.0% 53.0%
3182097 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 55.0 5.20e-01 92.9% 69.2%
3935174 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.72 54.0 5.28e-01 91.1% 73.3%
4565837 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.72 59.0 4.96e-01 100.0% 52.6%
4124092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.09e-01 100.0% 65.7%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.72 58.0 4.94e-01 100.0% 54.4%
3639839 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.72 57.0 5.87e-01 92.9% 90.6%
3932647 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 59.0 5.18e-01 100.0% 61.2%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.70 61.0 5.65e-01 100.0% 77.1%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 58.0 5.22e-01 100.0% 66.7%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 53.0 4.61e-01 100.0% 52.2%
3622425 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 56.0 4.33e-01 100.0% 40.8%
3918299 4.1.1.376 beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.69 60.0 5.53e-01 100.0% 75.7%
3594413 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 61.0 5.42e-01 100.0% 76.2%
4565130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.72e-01 100.0% 53.7%
3642926 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 61.0 4.21e-01 100.0% 38.4%
5073807 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 61.0 4.60e-01 100.0% 50.0%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.68 51.0 4.52e-01 100.0% 55.3%
3867207 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.68 61.0 5.06e-01 100.0% 61.1%
3333339 4.8.1.34 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.68 50.0 4.85e-01 89.3% 70.8%
3553166 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 60.0 4.62e-01 100.0% 70.4%
4636455 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.67 49.0 5.24e-01 92.9% 97.8%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 60.0 5.58e-01 100.0% 84.3%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 54.0 4.07e-01 100.0% 37.7%
3715285 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.67 59.0 4.28e-01 100.0% 37.4%
5011086 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.67 47.0 4.03e-01 89.3% 46.7%
3519884 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.66 58.0 4.81e-01 100.0% 68.0%
4269861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.95e-01 94.6% 75.0%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 51.0 4.64e-01 100.0% 65.3%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.64 56.0 4.87e-01 98.2% 72.9%
3740221 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 56.0 4.07e-01 100.0% 37.5%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 55.0 4.62e-01 100.0% 60.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 52.0 4.45e-01 100.0% 54.7%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 50.0 4.36e-01 100.0% 55.6%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 52.0 4.48e-01 100.0% 57.8%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.39e-01 100.0% 56.7%
3469035 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 50.0 4.91e-01 92.9% 81.7%
3947700 4.8.1.25 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.62 54.0 5.25e-01 100.0% 87.3%
3612749 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.62 55.0 3.40e-01 100.0% 30.6%
4422252 4.1.1.455 beta barrels › SH3 › SH3 › SH3 › DSRB 0.62 54.0 5.28e-01 100.0% 91.7%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.62 54.0 4.94e-01 100.0% 81.3%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.61 50.0 4.46e-01 100.0% 62.4%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.61 50.0 4.38e-01 100.0% 58.9%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 50.0 4.30e-01 100.0% 55.8%
4981041 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.60 45.0 4.77e-01 94.6% 94.0%
3853638 4.8.1.9 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_2 0.59 47.0 4.24e-01 89.3% 73.8%
3669025 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 48.0 3.13e-01 94.6% 20.1%
5043126 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 50.0 4.77e-01 96.4% 86.2%
5044393 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 49.0 4.84e-01 100.0% 88.3%
3625547 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.57 44.0 2.67e-01 87.5% 38.6%
4978439 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.57 47.0 2.95e-01 96.4% 29.4%
5041532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 3.55e-01 94.6% 61.6%
5045322 331.6.1.0 a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.53 40.0 3.13e-01 94.6% 37.6%
4447649 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.52 42.0 2.85e-01 94.6% 69.8%
4950324 207.7.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C 0.51 40.0 2.70e-01 94.6% 23.5%