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YP_009981815.1
Arc-VirNC_052650__YP_009981815.1__JR051-gp09__00009
Identity
- Accession:
- NC_052650 ↗
- Protein ID:
- YP_009981815.1 ↗
- Kingdom:
- archaea
Quality
61.0
mean pLDDT
Taxonomy
TaxID: 169684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-184
Domain cluster:
rep: NC_018272.1__YP_006560400.1__B618_gp01__00001__D3-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14550.12 best | Peptidase_S78_2 | 37.4 | 3.60e-09 | 62.8% | 89.8% |
D2
high
residues 393-468
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.66 | 46.0 | 3.59e-01 | 73.7% | 73.8% |
| 4c2uA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.64 | 51.0 | 4.00e-01 | 88.2% | 68.6% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.64 | 35.0 | 3.22e-01 | 94.7% | 42.1% |
| 2kmuA00 | 1.10.10.1460 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 41.0 | 4.56e-01 | 76.3% | 91.1% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.61 | 48.0 | 3.85e-01 | 82.9% | 65.0% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 52.0 | 4.20e-01 | 94.7% | 72.0% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 53.0 | 3.40e-01 | 100.0% | 72.1% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 50.0 | 3.31e-01 | 88.2% | 53.0% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 44.0 | 3.70e-01 | 76.3% | 88.7% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 40.0 | 4.09e-01 | 81.6% | 69.9% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 42.0 | 3.70e-01 | 75.0% | 91.0% |
| 4xriA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 48.0 | 2.71e-01 | 89.5% | 13.4% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.58 | 44.0 | 4.35e-01 | 81.6% | 93.7% |
| 5z9iA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 49.0 | 3.23e-01 | 100.0% | 82.1% |
| 1m12A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.58 | 40.0 | 3.94e-01 | 72.4% | 71.4% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 41.0 | 3.60e-01 | 75.0% | 75.2% |
| 7ep1B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.57 | 43.0 | 3.06e-01 | 81.6% | 60.7% |
| 1cmjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 48.0 | 3.12e-01 | 98.7% | 78.4% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.56 | 45.0 | 3.30e-01 | 88.2% | 55.7% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.55 | 42.0 | 3.44e-01 | 82.9% | 61.6% |
| 3h95A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 37.0 | 3.14e-01 | 71.1% | 96.2% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.36e-01 | 100.0% | 92.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001714 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.70 | 52.0 | 3.27e-01 | 78.9% | 21.0% |
| 5026703 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.70 | 53.0 | 3.39e-01 | 81.6% | 24.9% |
| 3939446 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.70 | 50.0 | 3.93e-01 | 75.0% | 43.3% |
| 5051461 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 46.0 | 3.53e-01 | 72.4% | 54.7% |
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.66 | 47.0 | 4.86e-01 | 73.7% | 98.6% |
| 4113259 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.64 | 51.0 | 2.87e-01 | 88.2% | 11.6% |
| 3491185 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.64 | 44.0 | 2.94e-01 | 72.4% | 23.4% |
| 3490008 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 39.0 | 4.15e-01 | 71.1% | 72.3% |
| 3184988 | 109.4.1.1345 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, IBN_N, HEAT_EZ, TPR_IMB1 | 0.62 | 50.0 | 2.81e-01 | 85.5% | 12.3% |
| 3468645 | 4177.1.1.11 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 | 0.61 | 46.0 | 3.21e-01 | 81.6% | 23.9% |
| 3999456 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.61 | 50.0 | 4.22e-01 | 92.1% | 86.2% |
| 4941280 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.61 | 44.0 | 3.64e-01 | 77.6% | 48.6% |
| 3482330 | 541.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit | 0.60 | 38.0 | 4.09e-01 | 72.4% | 75.4% |
| 3687919 | 109.1.1.26 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_3 | 0.60 | 46.0 | 3.28e-01 | 86.8% | 42.6% |
| 5031401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 41.0 | 4.07e-01 | 72.4% | 70.0% |
| 3866264 | 109.4.1.2027 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_EMC2 | 0.58 | 43.0 | 3.38e-01 | 76.3% | 52.9% |
| 3549053 | 109.4.1.435 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_N | 0.57 | 43.0 | 3.15e-01 | 78.9% | 36.4% |
| 3206303 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.56 | 43.0 | 3.17e-01 | 81.6% | 35.5% |
| 3557240 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.56 | 46.0 | 2.97e-01 | 85.5% | 22.7% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.56 | 42.0 | 4.19e-01 | 81.6% | 83.7% |
| 3730549 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.55 | 44.0 | 2.83e-01 | 84.2% | 21.8% |
| 3168021 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.55 | 43.0 | 4.26e-01 | 86.8% | 97.5% |
| 4344761 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.55 | 41.0 | 3.46e-01 | 81.6% | 47.4% |
| 3843753 | 109.4.1.300 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZER1-like_2nd | 0.53 | 44.0 | 2.73e-01 | 89.5% | 23.4% |
| 3259758 | 109.4.1.454 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_GBD | 0.51 | 44.0 | 2.95e-01 | 97.4% | 41.6% |
| 3973765 | 564.1.1.3 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › DUF4880 | 0.50 | 34.0 | 3.75e-01 | 76.3% | 90.0% |
| 4145940 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.50 | 44.0 | 3.23e-01 | 100.0% | 65.2% |
D3
medium
residues 185-239