←Back to structures

YP_009981850.1

Arc-Vir

NC_052650__YP_009981850.1__JR051-gp45__00044

Identity

Accession:: NC_052650 ↗
Protein ID:: YP_009981850.1 ↗
Kingdom:: archaea

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Halobacterium_phage_phiH

TaxID: 169684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5xyiK00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	41.0	4.26e-01	84.0%	75.6%
4ifdG01	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.58	37.0	4.20e-01	85.1%	96.7%
3gw2A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	36.0	3.63e-01	81.9%	66.7%
4fe9A03	2.60.40.3620	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.55	40.0	3.80e-01	83.0%	65.5%
5uv6A03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	36.0	3.71e-01	70.2%	98.9%
4oo1I01	2.40.50.880	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.51	38.0	4.14e-01	83.0%	98.7%
3u5eU00	3.30.1360.210	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.51	36.0	3.54e-01	73.4%	83.0%
1vx7X00	3.30.1360.210	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.51	35.0	3.51e-01	72.3%	77.3%
4ifdI01	2.40.50.880	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.50	39.0	4.02e-01	83.0%	96.5%
2j3xA01	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.50	38.0	2.98e-01	83.0%	35.8%
2l04A00	2.60.40.1080	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	34.0	3.52e-01	70.2%	86.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3516458	325.1.8.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein	0.61	37.0	4.35e-01	83.0%	93.3%
3839705	325.1.8.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein	0.59	40.0	4.26e-01	70.2%	98.8%
4010024	223.1.1.160 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PF31091	0.58	36.0	3.36e-01	80.9%	50.0%
3790843	325.1.8.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N	0.56	36.0	4.15e-01	84.0%	100.0%
3788192	325.1.8.5 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › CSL4_N	0.51	41.0	4.20e-01	87.2%	97.7%
4972989	4955.1.1.0 ↗	a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.51	35.0	3.77e-01	71.3%	95.0%
4037292	4955.1.1.0 ↗	a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.51	35.0	3.79e-01	71.3%	95.0%
3387872	325.1.8.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein	0.50	39.0	4.04e-01	83.0%	87.8%