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YP_009981892.1

Arc-Vir

NC_052650__YP_009981892.1__JR051-gp87__00086

Identity

Accession:
NC_052650 ↗
Protein ID:
YP_009981892.1 ↗
Kingdom:
archaea

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Halobacterium_phage_phiH

TaxID: 169684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-51_131-163_181-248
PDB
Domain cluster: rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015305__D84-207
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.80 58.0 6.60e-01 81.4% 98.2%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.74 57.0 6.07e-01 84.1% 92.0%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.70 58.0 5.79e-01 86.9% 86.6%
6p4wB01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.69 50.0 5.63e-01 86.9% 100.0%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 55.0 5.46e-01 85.5% 98.0%
6p66D01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.66 48.0 5.38e-01 89.0% 100.0%
2ewfA03 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.65 53.0 4.60e-01 87.6% 71.1%
3dvoA00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.65 53.0 4.08e-01 88.3% 69.2%
2p14A00 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.64 54.0 4.93e-01 88.3% 80.6%
2ziuB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 48.0 4.75e-01 84.1% 79.2%
1j5xA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.59 38.0 3.84e-01 84.1% 63.3%
4qysA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 37.0 4.29e-01 78.6% 88.5%
3uc9A00 3.40.50.11960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 50.0 4.65e-01 91.7% 88.3%
1j31A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 48.0 3.97e-01 89.0% 77.4%
1dosA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 43.0 3.25e-01 77.9% 65.1%
3qq5A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 4.63e-01 89.7% 85.4%
2xdqA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 34.0 3.70e-01 88.3% 68.5%
2h9aA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.57 44.0 3.69e-01 82.1% 75.9%
4dg8A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.57 43.0 3.11e-01 86.2% 28.3%
2o7rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 46.0 3.65e-01 88.3% 73.9%
4bmdA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.56 31.0 3.62e-01 87.6% 76.8%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.56 46.0 3.88e-01 88.3% 76.2%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 45.0 4.70e-01 100.0% 94.1%
3nklB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 40.0 4.28e-01 87.6% 87.8%
2e7yB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 43.0 3.56e-01 84.8% 97.4%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 44.0 3.75e-01 88.3% 92.7%
7cpxA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.41e-01 89.0% 63.2%
2rjoA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 4.28e-01 89.7% 82.6%
1ydmB00 3.40.50.10420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like 0.53 43.0 4.00e-01 86.2% 95.1%
5fusA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 38.0 3.34e-01 73.8% 62.4%
4ncbA05 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 39.0 3.92e-01 89.0% 75.5%
4g0mA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 4.37e-01 89.0% 91.9%
1vm8B01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 40.0 2.85e-01 80.0% 44.9%
1z90B01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 40.0 3.05e-01 81.4% 51.4%
4fixA01 3.90.550.60 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.52 40.0 2.89e-01 79.3% 84.6%
3pdwA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 32.0 3.70e-01 84.8% 89.6%
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 3.46e-01 80.0% 56.4%
3tixB02 3.40.1010.30 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 0.51 37.0 4.03e-01 83.4% 89.5%
4muoA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.50 41.0 3.54e-01 89.0% 86.6%
4ii2A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 42.0 3.64e-01 90.3% 94.7%
4qtpD00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.50 36.0 3.96e-01 86.9% 94.8%
3sqsA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.50 41.0 3.50e-01 89.0% 88.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081250 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.92 76.0 8.21e-01 97.9% 97.6%
5053367 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.87 74.0 7.83e-01 100.0% 97.7%
5040208 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.87 76.0 7.85e-01 100.0% 97.8%
5078094 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 59.0 6.68e-01 80.7% 94.7%
5043832 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.81 65.0 7.11e-01 90.3% 99.2%
4989979 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 56.0 6.54e-01 87.6% 99.0%
3290660 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.80 59.0 6.54e-01 82.1% 94.8%
4999754 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.78 58.0 6.46e-01 82.1% 95.7%
4967863 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.78 63.0 6.83e-01 86.9% 97.6%
5009639 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 60.0 4.38e-01 82.1% 32.7%
4945135 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 72.0 7.12e-01 100.0% 94.7%
4958431 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 58.0 6.43e-01 81.4% 97.4%
4999354 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 73.0 7.06e-01 100.0% 90.6%
4984635 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 60.0 6.62e-01 83.4% 100.0%
5003652 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 56.0 6.28e-01 81.4% 96.5%
5014475 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 63.0 6.39e-01 86.9% 91.0%
5042516 2008.1.1.235 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.76 59.0 6.34e-01 83.4% 93.6%
5049141 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 63.0 5.69e-01 88.3% 84.7%
5078518 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.75 55.0 6.23e-01 84.1% 100.0%
5010842 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 61.0 5.96e-01 86.2% 81.3%
4975913 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.74 55.0 6.04e-01 83.4% 94.2%
5009448 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 54.0 5.82e-01 78.6% 88.0%
2715553 2008.1.1.34 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.73 58.0 6.29e-01 84.1% 99.2%
3166390 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 60.0 5.93e-01 86.2% 91.0%
4939656 2008.1.1.102 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 0.73 57.0 6.08e-01 86.2% 93.6%
5041799 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.73 51.0 5.27e-01 79.3% 75.0%
5009647 2008.1.1.235 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.73 56.0 4.94e-01 85.5% 55.7%
5073158 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 57.0 5.97e-01 82.8% 88.1%
5021928 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.73 57.0 5.54e-01 81.4% 76.9%
4933736 2008.1.1.223 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3782 0.73 53.0 4.77e-01 78.6% 55.9%
4964370 2008.1.1.230 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7527 0.72 59.0 5.00e-01 86.2% 98.7%
5018195 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.72 57.0 5.78e-01 82.1% 91.7%
4968712 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.72 57.0 5.44e-01 81.4% 74.5%
4010728 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.72 57.0 5.88e-01 81.4% 91.1%
4933191 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.72 53.0 5.31e-01 83.4% 73.3%
4969587 2008.1.1.108 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.72 54.0 5.71e-01 83.4% 86.2%
5009978 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.72 54.0 6.05e-01 83.4% 98.3%
5074968 2008.1.1.122 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII-MboI 0.72 54.0 5.47e-01 81.4% 77.9%
5009937 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 54.0 6.06e-01 83.4% 99.1%
3102571 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 59.0 5.98e-01 86.9% 95.1%
2721398 2008.1.1.34 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.71 59.0 6.28e-01 88.3% 98.4%
5001925 2008.1.1.108 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.71 56.0 5.60e-01 82.8% 84.0%
4220155 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.70 57.0 5.60e-01 85.5% 97.4%
4944368 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.69 57.0 5.55e-01 85.5% 97.4%
4342068 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.69 56.0 5.62e-01 85.5% 98.7%
4954934 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.69 52.0 5.15e-01 84.8% 73.5%
4339598 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.68 55.0 5.50e-01 84.8% 98.7%
5044073 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.68 56.0 5.11e-01 86.9% 98.4%
4946571 2008.1.1.85 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.68 56.0 4.92e-01 86.2% 61.5%
4965617 2008.1.1.219 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.68 54.0 5.65e-01 89.7% 93.1%
4950447 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.68 54.0 5.27e-01 82.1% 87.0%
5044119 2008.1.1.108 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.67 53.0 5.66e-01 84.1% 95.2%
5073860 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 52.0 5.34e-01 80.7% 91.4%
4927057 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 54.0 5.66e-01 86.2% 96.2%
3003620 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.65 37.0 3.91e-01 89.7% 60.2%
3839790 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.65 52.0 4.21e-01 86.9% 45.6%
198173 2008.1.1.45 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_AlwI 0.64 54.0 4.93e-01 88.3% 80.6%
4157798 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.64 51.0 5.12e-01 86.9% 82.0%
5010735 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 51.0 5.18e-01 88.3% 95.2%
3610413 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 47.0 3.92e-01 82.1% 58.4%
3813800 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.60 56.0 5.57e-01 100.0% 100.0%
4967866 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 50.0 4.26e-01 92.4% 88.1%
4370676 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.58 47.0 3.89e-01 86.2% 93.8%
5017427 2004.1.1.20 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Fer4_NifH 0.58 48.0 3.80e-01 90.3% 82.6%
3781249 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 4.31e-01 88.3% 89.5%
3950803 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.57 47.0 3.89e-01 89.0% 50.8%
4999640 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.56 47.0 4.14e-01 90.3% 64.8%
3412552 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.56 45.0 4.10e-01 85.5% 84.7%
3704350 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.55 44.0 4.52e-01 89.0% 87.8%
3183795 2003.1.7.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.54 43.0 3.66e-01 86.2% 86.9%
3274981 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 38.0 2.92e-01 74.5% 64.8%
3495776 2003.1.7.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.52 42.0 3.59e-01 86.2% 95.4%
3684415 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.51 39.0 3.35e-01 80.0% 67.1%
4075430 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.51 43.0 3.67e-01 91.0% 78.7%
3673402 247.1.1.31 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 0.51 42.0 2.64e-01 87.6% 41.2%
1489340 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.51 42.0 3.53e-01 87.6% 63.7%
5072607 7592.1.1.0 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.50 39.0 4.08e-01 85.5% 90.8%
D2 high residues 59-126
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 5.98e-01 83.8% 98.6%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 68.0 5.75e-01 100.0% 73.6%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 5.36e-01 86.8% 64.2%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 5.76e-01 89.7% 84.5%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.08e-01 88.2% 63.5%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.87e-01 97.1% 80.6%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 5.30e-01 86.8% 77.6%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.23e-01 82.4% 72.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.10e-01 91.2% 68.6%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.54e-01 92.6% 85.0%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.72e-01 86.8% 96.9%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.98e-01 82.4% 83.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.43e-01 88.2% 44.3%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 4.61e-01 92.6% 64.0%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 4.93e-01 92.6% 63.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.52e-01 95.6% 87.1%
5bpdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.26e-01 86.8% 86.7%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.41e-01 82.4% 95.1%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.19e-01 92.6% 75.8%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.69 55.0 4.51e-01 86.8% 95.1%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.39e-01 88.2% 45.1%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 4.96e-01 98.5% 67.5%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.28e-01 92.6% 70.8%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.13e-01 86.8% 69.5%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 5.08e-01 94.1% 76.3%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.91e-01 92.6% 68.7%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 58.0 5.26e-01 98.5% 76.3%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.70e-01 80.9% 72.0%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.57e-01 80.9% 78.4%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.36e-01 79.4% 92.5%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.80e-01 77.9% 92.5%
4bgdA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.43e-01 80.9% 94.4%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.20e-01 100.0% 92.0%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.08e-01 97.1% 77.8%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 4.17e-01 76.5% 68.6%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.60 52.0 4.79e-01 100.0% 91.0%
2llwA00 1.10.260.100 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.57 46.0 4.57e-01 92.6% 88.7%
1bc0A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.56 40.0 3.77e-01 77.9% 69.8%
1f7uA03 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.55 38.0 3.09e-01 70.6% 70.9%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 41.0 3.42e-01 88.2% 80.1%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.93e-01 98.5% 70.7%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 38.0 3.90e-01 80.9% 92.3%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.51 42.0 3.41e-01 95.6% 55.5%
1rrzA00 1.20.970.20 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Glycogen synthesis protein GlgS 0.51 35.0 3.62e-01 79.4% 77.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3826771 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.79 69.0 5.52e-01 100.0% 51.2%
2387843 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.77 61.0 5.07e-01 86.8% 60.3%
138903 101.1.2.232 ↗ alpha arrays › HTH › HTH › winged helix domain › MLPTv-like_HTH 0.75 67.0 5.50e-01 100.0% 66.4%
4015761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.90e-01 100.0% 80.0%
4534098 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.74 65.0 4.85e-01 100.0% 44.6%
4965087 101.1.2.909 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.73 59.0 5.87e-01 88.2% 84.3%
5008813 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 4.87e-01 100.0% 43.6%
5031515 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.73 59.0 5.39e-01 92.6% 75.8%
5015219 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.38e-01 91.2% 68.4%
4994239 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.73 57.0 5.28e-01 86.8% 80.9%
3307139 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.73 65.0 5.25e-01 100.0% 57.7%
4999827 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.72 59.0 5.27e-01 91.2% 67.3%
5064533 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 5.34e-01 79.4% 80.0%
4979152 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.72 59.0 5.36e-01 92.6% 67.4%
4468068 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.72 56.0 5.00e-01 86.8% 66.0%
142831 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.72 54.0 5.19e-01 82.4% 70.9%
4972260 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.60e-01 98.5% 87.4%
3794916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 5.33e-01 86.8% 85.0%
4940464 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.71 56.0 4.84e-01 88.2% 63.6%
4992861 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.71 58.0 5.25e-01 92.6% 66.3%
5077830 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.44e-01 98.5% 89.5%
5040214 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.70 57.0 4.89e-01 91.2% 63.6%
3957409 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 61.0 5.42e-01 100.0% 74.0%
5078903 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.69 54.0 4.55e-01 89.7% 49.2%
5077994 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.69 57.0 4.55e-01 92.6% 46.4%
4995430 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 56.0 5.09e-01 92.6% 70.5%
4933456 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 57.0 5.48e-01 98.5% 80.0%
5079308 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.69 54.0 4.51e-01 88.2% 49.6%
4012859 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.24e-01 100.0% 80.0%
5006819 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 55.0 5.00e-01 91.2% 69.5%
2576 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 58.0 5.28e-01 92.6% 70.8%
3590563 101.1.2.272 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF1803 0.68 58.0 5.40e-01 100.0% 76.7%
3786649 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.68 50.0 4.57e-01 80.9% 88.4%
4112271 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.91e-01 80.9% 77.3%
5079354 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.68 57.0 3.91e-01 98.5% 25.9%
5064454 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.31e-01 100.0% 74.7%
4158334 101.1.2.494 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25873 0.67 59.0 5.43e-01 100.0% 77.8%
5015489 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.67 50.0 3.01e-01 80.9% 11.8%
3291655 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.67 55.0 4.99e-01 92.6% 69.5%
4049886 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 5.12e-01 100.0% 95.5%
5008425 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 59.0 5.60e-01 97.1% 90.0%
5077926 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 53.0 4.31e-01 89.7% 46.7%
5019166 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 5.10e-01 92.6% 74.1%
5029703 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.27e-01 92.6% 93.2%
4997427 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.23e-01 98.5% 80.0%
5073003 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.66 58.0 4.02e-01 100.0% 74.0%
4950772 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.07e-01 100.0% 72.0%
5077975 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.61e-01 89.7% 63.8%
4039627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 50.0 3.74e-01 83.8% 32.2%
5041252 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.65 56.0 5.49e-01 100.0% 92.0%
4971766 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 5.01e-01 100.0% 66.0%
5019169 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 55.0 5.24e-01 98.5% 86.3%
5027549 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 55.0 5.31e-01 100.0% 85.0%
4016324 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.60e-01 100.0% 68.0%
3942666 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 52.0 4.73e-01 98.5% 73.5%
5013240 101.1.2.674 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29648 0.62 54.0 5.00e-01 95.6% 94.1%
5053885 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 52.0 4.57e-01 100.0% 69.0%
3201922 101.1.3.15 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-binding 0.58 42.0 4.31e-01 80.9% 83.1%
5065109 3054.1.1.0 ↗ alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.55 41.0 3.77e-01 79.4% 67.8%
3372352 101.1.1.69 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 0.55 41.0 4.08e-01 80.9% 81.4%