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NC_052653.1__YP_009984613.1__JR318_gp014__00014
Bact-VirNC_052653.1__YP_009984613.1__JR318_gp014__00014
Identity
- Accession:
- NC_052653 ↗
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Taxonomy
TaxID: 2315527
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-78
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 51.0 | 5.05e-01 | 98.7% | 65.4% |
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.69 | 48.0 | 4.06e-01 | 72.0% | 47.5% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 49.0 | 4.79e-01 | 76.0% | 71.8% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.69 | 49.0 | 3.40e-01 | 76.0% | 23.3% |
| 2k3oA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.68 | 54.0 | 4.47e-01 | 94.7% | 48.8% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 58.0 | 5.18e-01 | 100.0% | 89.9% |
| 2optA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 58.0 | 4.72e-01 | 100.0% | 52.1% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 43.0 | 4.42e-01 | 96.0% | 73.2% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.64 | 55.0 | 5.23e-01 | 100.0% | 87.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.64 | 55.0 | 4.92e-01 | 100.0% | 89.2% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 43.0 | 4.47e-01 | 98.7% | 75.4% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.63 | 49.0 | 4.90e-01 | 92.0% | 82.1% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 55.0 | 4.37e-01 | 98.7% | 50.6% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.62 | 41.0 | 3.61e-01 | 100.0% | 45.5% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.62 | 47.0 | 4.79e-01 | 81.3% | 98.6% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 38.0 | 3.99e-01 | 94.7% | 67.6% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 47.0 | 3.92e-01 | 85.3% | 84.8% |
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.60 | 48.0 | 4.79e-01 | 97.3% | 85.0% |
| 4akgA14 | 1.20.1280.160 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 52.0 | 4.68e-01 | 98.7% | 100.0% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.60 | 51.0 | 4.36e-01 | 100.0% | 85.7% |
| 5cofA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.59 | 43.0 | 3.38e-01 | 78.7% | 72.1% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.59 | 40.0 | 3.85e-01 | 70.7% | 61.5% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 48.0 | 3.95e-01 | 93.3% | 86.9% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.58 | 41.0 | 3.98e-01 | 76.0% | 67.1% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.57 | 50.0 | 4.05e-01 | 100.0% | 84.8% |
| 2c2aA01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.57 | 39.0 | 3.64e-01 | 89.3% | 57.8% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 43.0 | 4.41e-01 | 94.7% | 86.3% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.55 | 46.0 | 4.15e-01 | 98.7% | 67.0% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 46.0 | 4.47e-01 | 96.0% | 89.7% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.55 | 39.0 | 4.14e-01 | 76.0% | 83.6% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 41.0 | 3.60e-01 | 78.7% | 56.9% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 3.88e-01 | 78.7% | 70.4% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.54 | 40.0 | 4.36e-01 | 78.7% | 92.2% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 41.0 | 3.30e-01 | 81.3% | 42.2% |
| 3he0B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 3.54e-01 | 98.7% | 44.9% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 46.0 | 4.14e-01 | 98.7% | 86.0% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.54 | 37.0 | 3.86e-01 | 96.0% | 80.0% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.54 | 44.0 | 4.58e-01 | 92.0% | 98.6% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.07e-01 | 96.0% | 85.1% |
| 2uxwA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 40.0 | 3.35e-01 | 81.3% | 62.3% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 44.0 | 3.90e-01 | 100.0% | 76.3% |
| 2l6hA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 42.0 | 3.48e-01 | 96.0% | 61.0% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 38.0 | 3.83e-01 | 80.0% | 78.7% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.60e-01 | 97.3% | 72.1% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 41.0 | 3.81e-01 | 88.0% | 79.2% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 43.0 | 4.00e-01 | 97.3% | 82.5% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 41.0 | 3.23e-01 | 89.3% | 87.9% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.50 | 43.0 | 4.13e-01 | 100.0% | 89.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4818811 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.74 | 66.0 | 5.52e-01 | 100.0% | 80.2% |
| 4931030 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.74 | 66.0 | 5.73e-01 | 100.0% | 66.1% |
| 3504477 | 1111.1.1.1 ↗ | alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Gly_transporter | 0.69 | 60.0 | 4.49e-01 | 100.0% | 37.5% |
| 4955947 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.69 | 56.0 | 5.64e-01 | 89.3% | 85.3% |
| 5005999 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.69 | 57.0 | 3.90e-01 | 100.0% | 24.5% |
| 3390124 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.68 | 56.0 | 3.94e-01 | 90.7% | 61.7% |
| 4501940 | 1111.1.1.1 ↗ | alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Gly_transporter | 0.68 | 58.0 | 4.36e-01 | 100.0% | 36.8% |
| 4150655 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.66 | 59.0 | 4.20e-01 | 100.0% | 72.4% |
| 3163928 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.65 | 57.0 | 4.30e-01 | 100.0% | 41.0% |
| 3359095 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.65 | 55.0 | 5.52e-01 | 93.3% | 93.3% |
| 3927621 | 3890.1.1.3 ↗ | alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › ZYG-11_interact | 0.65 | 56.0 | 4.19e-01 | 100.0% | 79.0% |
| 3789973 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.64 | 44.0 | 3.67e-01 | 82.7% | 41.5% |
| 3500854 | 7529.1.1.11 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 | 0.63 | 56.0 | 3.58e-01 | 98.7% | 26.4% |
| 4997249 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.63 | 53.0 | 5.06e-01 | 94.7% | 78.8% |
| 5065764 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.63 | 47.0 | 4.25e-01 | 80.0% | 93.3% |
| 4029754 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 43.0 | 4.22e-01 | 72.0% | 67.1% |
| 3264566 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 56.0 | 4.04e-01 | 100.0% | 69.0% |
| 5050707 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.62 | 50.0 | 5.05e-01 | 93.3% | 89.3% |
| 5072726 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.61 | 53.0 | 5.31e-01 | 97.3% | 98.7% |
| 5006457 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.61 | 51.0 | 3.82e-01 | 100.0% | 51.8% |
| 4930916 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.61 | 48.0 | 4.68e-01 | 93.3% | 77.6% |
| 5019536 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.60 | 43.0 | 3.12e-01 | 76.0% | 25.8% |
| 3183786 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 42.0 | 3.98e-01 | 82.7% | 60.7% |
| 4989102 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.60 | 48.0 | 4.59e-01 | 92.0% | 74.4% |
| 5060491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.59 | 41.0 | 3.47e-01 | 86.7% | 44.2% |
| 4990586 | 129.1.1.4 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › IlvC | 0.59 | 52.0 | 4.09e-01 | 96.0% | 83.2% |
| 4978469 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.56 | 47.0 | 3.52e-01 | 100.0% | 83.1% |
| 4027330 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.55 | 50.0 | 4.12e-01 | 100.0% | 80.8% |
| 3556701 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 49.0 | 3.85e-01 | 100.0% | 87.1% |
| 5004728 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.52 | 40.0 | 3.68e-01 | 82.7% | 78.0% |
| 5035838 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.52 | 40.0 | 3.80e-01 | 82.7% | 71.1% |
| 4969464 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.52 | 44.0 | 4.23e-01 | 97.3% | 88.9% |
| 5035839 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 38.0 | 3.89e-01 | 81.3% | 80.0% |
| 3515526 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.50 | 45.0 | 3.73e-01 | 100.0% | 88.9% |