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NC_052653.1__YP_009984620.1__JR318_gp021__00021
Bact-VirNC_052653.1__YP_009984620.1__JR318_gp021__00021
Identity
- Accession:
- NC_052653 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
TaxID: 2315527
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-69
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1acxA00 | 2.60.40.230 | Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like | 0.57 | 48.0 | 3.98e-01 | 100.0% | 67.6% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.51 | 40.0 | 3.20e-01 | 89.1% | 92.7% |
| 4me8A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.51 | 37.0 | 2.98e-01 | 80.0% | 94.0% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 35.0 | 3.09e-01 | 87.3% | 44.2% |
| 3daoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 41.0 | 3.45e-01 | 100.0% | 77.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3305957 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.64 | 46.0 | 4.67e-01 | 96.4% | 78.2% |
| 5031641 | 4093.1.1.0 ↗ | a+b three layers › CofE-like › CofE-like › CofE-like | 0.64 | 55.0 | 4.28e-01 | 100.0% | 52.0% |
| 5023302 | 4093.1.1.0 ↗ | a+b three layers › CofE-like › CofE-like › CofE-like | 0.61 | 52.0 | 3.76e-01 | 100.0% | 34.9% |
| 4953032 | 4093.1.1.1 ↗ | a+b three layers › CofE-like › CofE-like › CofE-like › F420_ligase | 0.61 | 52.0 | 3.94e-01 | 100.0% | 45.0% |
| 3390587 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 41.0 | 3.98e-01 | 100.0% | 70.0% |
| 3237024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 41.0 | 3.25e-01 | 96.4% | 36.7% |
| 3459483 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.52 | 36.0 | 3.32e-01 | 100.0% | 52.5% |
| 3392304 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.50 | 41.0 | 3.35e-01 | 90.9% | 57.1% |