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NC_052656.1__YP_009985447.1__JR321_gp104__00104
Bact-VirNC_052656.1__YP_009985447.1__JR321_gp104__00104
Identity
- Accession:
- NC_052656 ↗
- Kingdom:
- phage
Quality
75.6
mean pLDDT
Taxonomy
TaxID: 2696383
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-54
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jvwA01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.69 | 45.0 | 4.24e-01 | 93.9% | 55.0% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.55 | 49.0 | 3.38e-01 | 100.0% | 55.1% |
| 3hgkE00 | 1.20.1280.110 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 38.0 | 3.34e-01 | 75.5% | 81.8% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.51 | 40.0 | 3.18e-01 | 87.8% | 56.2% |
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.51 | 39.0 | 2.33e-01 | 100.0% | 85.2% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.60e-01 | 81.6% | 93.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3597307 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.75 | 51.0 | 4.19e-01 | 71.4% | 81.2% |
| 184691 | 130.2.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › PF09905 (DUF2132) › PF09905 (DUF2132) › VF530 | 0.69 | 45.0 | 3.81e-01 | 93.9% | 40.2% |
| 5024275 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.62 | 49.0 | 2.96e-01 | 87.8% | 12.6% |
| 3604485 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.60 | 47.0 | 2.86e-01 | 87.8% | 13.0% |
| 3269113 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 45.0 | 2.68e-01 | 85.7% | 18.0% |
| 3366265 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.52 | 42.0 | 3.34e-01 | 93.9% | 44.5% |
| 3326967 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.52 | 41.0 | 3.62e-01 | 91.8% | 62.5% |