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NC_052658.1__YP_009986023.1__JR323_gp108__00169
Bact-VirNC_052658.1__YP_009986023.1__JR323_gp108__00169
Identity
- Accession:
- NC_052658 ↗
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Taxonomy
TaxID: 2696431
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-74
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i00A03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.57 | 32.0 | 2.89e-01 | 100.0% | 38.9% |
| 3pm9A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 41.0 | 3.46e-01 | 83.6% | 91.8% |
| 7plsA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 41.0 | 3.75e-01 | 83.6% | 81.7% |
| 3iteB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 42.0 | 2.70e-01 | 92.5% | 72.1% |
| 2mp1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 33.0 | 3.20e-01 | 100.0% | 54.5% |
| 5e7qA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 42.0 | 2.71e-01 | 94.0% | 54.2% |
| 2m3lA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.52 | 38.0 | 3.73e-01 | 89.6% | 72.4% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 40.0 | 3.66e-01 | 88.1% | 88.2% |
| 3g7qA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 37.0 | 2.73e-01 | 83.6% | 71.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3428887 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.66 | 54.0 | 4.87e-01 | 92.5% | 94.7% |
| 3739102 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.61 | 49.0 | 4.93e-01 | 92.5% | 97.1% |
| 3275670 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.61 | 50.0 | 5.00e-01 | 92.5% | 94.3% |
| 4890526 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.61 | 50.0 | 5.06e-01 | 92.5% | 98.5% |
| 3740646 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.59 | 43.0 | 4.07e-01 | 77.6% | 82.5% |
| 4982094 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.58 | 43.0 | 3.35e-01 | 85.1% | 91.2% |
| 5058193 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.57 | 45.0 | 4.29e-01 | 88.1% | 96.2% |
| 4363284 | 148.1.3.203 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 | 0.57 | 44.0 | 3.60e-01 | 89.6% | 77.1% |
| 4207587 | 6094.1.1.2 ↗ | a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › RhiE-like_linker | 0.55 | 41.0 | 3.43e-01 | 79.1% | 72.2% |
| 3717855 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.53 | 40.0 | 4.02e-01 | 92.5% | 80.0% |
| 3792647 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.53 | 47.0 | 3.16e-01 | 100.0% | 84.4% |
| 3252932 | 221.7.1.2 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E1_UFD | 0.51 | 39.0 | 3.71e-01 | 92.5% | 95.6% |
| 3855125 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 34.0 | 2.30e-01 | 70.1% | 53.2% |