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NC_052660.1__YP_009986514.1__JR325_gp138__00138

Bact-Vir

NC_052660.1__YP_009986514.1__JR325_gp138__00138

Identity

Accession:
NC_052660 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phapecoctavirus› Escherichia_phage_tuntematon

TaxID: 2696455

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-73
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 50.0 5.19e-01 98.3% 92.6%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.62 56.0 4.15e-01 100.0% 48.6%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 49.0 3.77e-01 88.3% 73.9%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 36.0 3.42e-01 91.7% 50.0%
7ocsB01 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 50.0 3.70e-01 100.0% 69.9%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 40.0 2.84e-01 73.3% 82.9%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 49.0 4.14e-01 98.3% 58.8%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 46.0 3.38e-01 95.0% 42.9%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 4.23e-01 100.0% 95.5%
1nt4A02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 43.0 3.36e-01 93.3% 99.3%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.11e-01 100.0% 95.6%
3e15A00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 2.80e-01 93.3% 95.9%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.53 43.0 4.28e-01 100.0% 85.5%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.68e-01 95.0% 69.1%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.53 42.0 2.94e-01 90.0% 60.6%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 36.0 2.81e-01 71.7% 70.8%
7p7cC02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.53 41.0 2.61e-01 90.0% 53.8%
5x1yA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.19e-01 91.7% 41.0%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 3.23e-01 98.3% 76.9%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 2.95e-01 96.7% 53.5%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 2.97e-01 100.0% 44.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012507 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.69 55.0 3.82e-01 86.7% 80.5%
4975557 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 43.0 3.28e-01 100.0% 29.7%
3839604 592.2.1.4 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › Tipalpha 0.63 56.0 4.14e-01 100.0% 46.4%
3805804 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 53.0 4.71e-01 100.0% 83.5%
5051998 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.59 43.0 3.31e-01 76.7% 54.8%
4936865 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 3.93e-01 100.0% 46.4%
3401499 2007.1.7.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes 0.57 37.0 2.87e-01 91.7% 27.3%
4013791 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 49.0 3.41e-01 98.3% 87.0%
5056127 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 48.0 2.85e-01 100.0% 13.3%
5066423 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.56 43.0 3.61e-01 85.0% 82.7%
4192693 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 49.0 4.41e-01 100.0% 92.9%
4948264 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.55 45.0 4.06e-01 88.3% 88.7%
4032882 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 48.0 4.21e-01 100.0% 86.0%
3290300 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 48.0 4.28e-01 100.0% 95.3%
3488179 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.54 44.0 3.78e-01 100.0% 57.8%
3514912 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 46.0 4.33e-01 98.3% 94.7%
3929725 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 47.0 4.07e-01 100.0% 89.5%
5071667 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.54 47.0 3.15e-01 100.0% 39.5%
3272887 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 40.0 3.09e-01 80.0% 80.0%
4032084 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 47.0 4.04e-01 100.0% 83.2%
5022543 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.53 46.0 2.71e-01 100.0% 12.7%
4963902 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.52 43.0 3.67e-01 93.3% 79.0%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.52 35.0 3.36e-01 70.0% 84.3%
3638939 207.1.1.132 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8 0.52 39.0 2.26e-01 80.0% 18.7%
3696407 4121.1.1.7 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.52 45.0 3.09e-01 100.0% 49.8%
5021572 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.52 44.0 2.78e-01 95.0% 33.2%
4970975 247.1.1.30 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.51 40.0 2.75e-01 90.0% 34.4%
3192705 304.112.1.2 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 43.0 3.06e-01 93.3% 48.6%
2387792 1205.1.1.0 ↗ a+b two layers › C-terminal domain of CdiA toxin 0.51 36.0 3.43e-01 76.7% 82.7%
4931497 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.51 42.0 3.57e-01 100.0% 77.4%
3907411 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.51 45.0 2.83e-01 100.0% 66.1%
4461866 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.51 31.0 2.56e-01 91.7% 32.7%
5077770 2500.1.1.3 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like 0.51 41.0 2.50e-01 100.0% 19.8%
4938125 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.50 45.0 4.00e-01 100.0% 91.8%
4011706 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 2.37e-01 96.7% 23.2%
5050481 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 37.0 2.90e-01 100.0% 35.3%