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NC_052661.1__YP_009986745.1__JR326_gp089__00089

Bact-Vir

NC_052661.1__YP_009986745.1__JR326_gp089__00089

Identity

Accession:
NC_052661 ↗
Kingdom:
phage

Quality

67.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phapecoctavirus› Escherichia_phage_ukendt

TaxID: 2696458

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-90
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 4.96e-01 94.1% 100.0%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 50.0 5.05e-01 96.5% 79.5%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 48.0 4.91e-01 96.5% 78.6%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 40.0 3.47e-01 100.0% 41.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 49.0 5.23e-01 100.0% 100.0%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 37.0 4.40e-01 92.9% 100.0%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.83e-01 97.6% 95.6%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 40.0 3.30e-01 87.1% 90.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 41.0 4.45e-01 95.3% 71.4%
3355992 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 34.0 4.41e-01 82.4% 86.7%
1756103 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 48.0 5.17e-01 94.1% 87.7%
3756676 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.66 49.0 4.66e-01 100.0% 67.0%
4333277 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.66 48.0 4.79e-01 100.0% 74.4%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 49.0 5.20e-01 100.0% 92.0%
3436497 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 31.0 3.60e-01 81.2% 61.7%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.07e-01 98.8% 60.0%
2499543 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 50.0 5.11e-01 100.0% 92.5%
3596265 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.16e-01 96.5% 68.0%
4952432 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.56 36.0 3.85e-01 87.1% 78.6%
3741719 1195.1.1.0 ↗ a+b complex topology › Suppressor of hydroxyurea sensitivity protein 2 › Suppressor of hydroxyurea sensitivity protein 2 › Suppressor of hydroxyurea sensitivity protein 2 0.53 42.0 3.53e-01 87.1% 84.4%
3930901 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.52 42.0 3.37e-01 88.2% 78.8%
D2 high residues 105-190
PDB
D3 high residues 208-260
PDB