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NC_052938.1__YP_009996742.1__JTF57_gp06__00006

Bact-Vir

NC_052938.1__YP_009996742.1__JTF57_gp06__00006

Identity

Accession:
NC_052938 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Orlajensenviridae› Paopuvirus› Microbacterium_phage_PoRanda

TaxID: 2743924

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-110
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.68 47.0 5.10e-01 70.9% 93.4%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.67 40.0 4.36e-01 70.9% 72.2%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.64 57.0 5.23e-01 98.2% 89.7%
1wmwB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 57.0 4.06e-01 97.3% 59.2%
3aqbB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 56.0 4.02e-01 98.2% 56.4%
1v4eA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 54.0 4.05e-01 95.5% 62.9%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 38.0 3.95e-01 97.3% 65.0%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 55.0 4.08e-01 100.0% 69.8%
1ekjA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.61 42.0 3.39e-01 70.9% 78.1%
2hqcA01 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.58 50.0 4.14e-01 95.5% 65.3%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 40.0 3.83e-01 80.0% 61.4%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 42.0 4.41e-01 88.2% 87.6%
4lp8A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 35.0 3.62e-01 97.3% 65.4%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 39.0 4.09e-01 71.8% 77.5%
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.56 40.0 3.63e-01 72.7% 76.6%
2wglA00 1.10.4190.10 Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF 0.55 38.0 3.11e-01 98.2% 37.3%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 34.0 3.43e-01 97.3% 60.7%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 36.0 3.95e-01 72.7% 83.9%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 39.0 3.98e-01 88.2% 77.4%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 4.16e-01 89.1% 86.9%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 34.0 3.31e-01 93.6% 58.5%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 43.0 4.07e-01 90.9% 73.7%
4akvA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 36.0 3.09e-01 71.8% 88.4%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 44.0 4.06e-01 95.5% 78.3%
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.51 45.0 3.51e-01 99.1% 68.2%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.50 44.0 4.02e-01 97.3% 91.7%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.50 40.0 3.35e-01 87.3% 76.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278820 191.1.1.48 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 0.63 45.0 4.45e-01 75.5% 72.5%
3587648 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.63 50.0 4.96e-01 84.5% 100.0%
3273235 148.1.3.40 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.62 56.0 5.13e-01 98.2% 80.0%
4988877 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.62 55.0 3.95e-01 98.2% 56.7%
3908574 5049.1.1.1 ↗ alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp 0.62 53.0 3.60e-01 94.5% 32.0%
5038046 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.61 42.0 3.60e-01 75.5% 41.6%
5001330 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 4.86e-01 94.5% 87.8%
3593162 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 42.0 2.95e-01 77.3% 72.1%
3780939 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 49.0 3.29e-01 100.0% 67.8%
3814488 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 46.0 4.61e-01 90.9% 88.2%
3220314 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.54 35.0 3.12e-01 97.3% 46.7%
3940518 1076.1.1.6 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › DUF2053 0.54 46.0 3.78e-01 95.5% 88.8%
3742544 103.4.1.2 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.54 47.0 4.79e-01 97.3% 96.4%
4027655 5069.1.3.23 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DAD 0.54 37.0 3.87e-01 70.9% 82.0%
4225289 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.53 43.0 4.26e-01 90.9% 83.5%
3455585 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.52 42.0 4.39e-01 95.5% 95.0%
3928247 604.1.1.106 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TPR_SYVN1_N 0.52 43.0 3.33e-01 93.6% 70.7%
3431012 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.52 42.0 4.38e-01 92.7% 96.0%
3637541 149.1.1.0 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.50 44.0 3.19e-01 98.2% 34.2%
4323439 3238.1.1.2 ↗ alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › TAL_effector 0.50 34.0 2.97e-01 97.3% 42.2%