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NC_052940.1__YP_009996806.1__JTF59_gp20__00020

Bact-Vir

Identity

Accession:: NC_052940 ↗
Kingdom:: phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Orlajensenviridae› Bonaevitaevirus› Microbacterium_phage_BonaeVitae

TaxID: 2126925

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zihA00	3.30.110.150	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein	0.65	36.0	3.71e-01	73.8%	55.7%
2gukA00	3.30.2190.10	Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like	0.61	39.0	3.61e-01	77.4%	49.5%
1rq5A02	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.57	49.0	3.09e-01	98.8%	93.1%
8agaA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	38.0	3.35e-01	70.2%	47.6%
3sooA01	3.30.250.20	Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain	0.56	35.0	3.84e-01	97.6%	76.8%
1y0nA00	1.10.10.610	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like	0.55	31.0	3.32e-01	78.6%	63.4%
2b7nA01	3.90.1170.20	Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain	0.53	36.0	3.15e-01	70.2%	85.8%
7dvrA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	35.0	3.01e-01	70.2%	47.5%
2x5cA01	3.30.70.3590	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	35.0	3.47e-01	71.4%	91.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3391017	386.1.1.18 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz	0.65	35.0	4.52e-01	77.4%	97.8%
4930596	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.56	40.0	3.21e-01	76.2%	65.3%
4645846	375.1.1.179 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha	0.55	33.0	2.57e-01	91.7%	30.0%
3623773	377.9.1.1 ↗	few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND	0.55	40.0	3.99e-01	75.0%	78.8%
3212133	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.54	27.0	3.33e-01	70.2%	78.0%
3763444	386.1.1.1 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2	0.53	38.0	3.73e-01	81.0%	67.4%
4061693	101.28.1.1 ↗	alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC	0.53	32.0	2.97e-01	82.1%	44.3%
3218679	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.53	32.0	3.28e-01	79.8%	61.3%
5022231	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.52	38.0	3.37e-01	82.1%	52.0%
5053252	101.1.2.304 ↗	alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase	0.51	39.0	3.62e-01	83.3%	69.1%
4951670	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.50	36.0	4.07e-01	97.6%	98.5%
5052686	2003.1.5.6 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F	0.50	40.0	2.71e-01	86.9%	24.9%