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NC_052972.1__YP_009997410.1__JT314_gp29__00029

Bact-Vir

NC_052972.1__YP_009997410.1__JT314_gp29__00029

Identity

Accession:
NC_052972 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 48.0 5.20e-01 92.3% 90.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 44.0 4.88e-01 71.8% 82.5%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.63 52.0 3.72e-01 92.3% 31.8%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.63 53.0 4.42e-01 93.6% 78.8%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.62 48.0 4.18e-01 98.7% 53.2%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 45.0 3.68e-01 76.9% 75.0%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.61 42.0 4.30e-01 73.1% 87.0%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.61 52.0 4.64e-01 94.9% 82.1%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 44.0 3.46e-01 75.6% 71.4%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 44.0 3.66e-01 76.9% 75.2%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 43.0 3.80e-01 76.9% 91.5%
3b7kC02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.75e-01 75.6% 98.2%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.46e-01 75.6% 70.2%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 47.0 4.16e-01 85.9% 83.6%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 50.0 4.25e-01 100.0% 75.9%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 40.0 3.48e-01 73.1% 89.1%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 39.0 3.15e-01 70.5% 89.9%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.56 41.0 3.54e-01 76.9% 90.3%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.56 47.0 4.17e-01 96.2% 80.0%
4lzkA00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.56 40.0 3.21e-01 75.6% 52.8%
2hzmB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 48.0 3.52e-01 97.4% 85.5%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 40.0 3.19e-01 75.6% 67.9%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.31e-01 74.4% 92.5%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.36e-01 76.9% 80.9%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.55 47.0 3.38e-01 100.0% 72.4%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 40.0 3.33e-01 79.5% 95.7%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 42.0 3.28e-01 87.2% 86.2%
1dhnA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 44.0 3.87e-01 92.3% 73.6%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 41.0 3.36e-01 83.3% 93.5%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 45.0 3.98e-01 100.0% 84.9%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 46.0 2.84e-01 100.0% 35.8%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 4.05e-01 93.6% 89.0%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 38.0 2.90e-01 75.6% 30.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 3.04e-01 98.7% 25.1%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 45.0 3.75e-01 98.7% 87.3%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.86e-01 98.7% 90.6%
4f54A00 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 46.0 3.51e-01 100.0% 74.3%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 44.0 3.73e-01 100.0% 85.1%
3dukA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.86e-01 100.0% 85.6%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.31e-01 97.4% 57.9%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.70e-01 98.7% 93.3%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.54e-01 85.9% 60.8%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 43.0 3.59e-01 100.0% 67.1%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.79e-01 100.0% 89.5%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.50 41.0 3.19e-01 89.7% 79.8%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 43.0 3.72e-01 98.7% 92.1%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 43.0 3.69e-01 100.0% 87.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3837731 5084.1.1.3 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.70 51.0 4.45e-01 76.9% 83.1%
3928228 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.69 58.0 4.07e-01 92.3% 32.5%
3604380 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.66 54.0 4.40e-01 88.5% 51.7%
3786132 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.66 52.0 4.25e-01 87.2% 46.2%
5060223 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.66 55.0 4.02e-01 92.3% 34.6%
3971164 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.65 46.0 2.90e-01 75.6% 55.6%
3738810 4252.1.1.5 beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.63 56.0 4.36e-01 100.0% 76.6%
3736957 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.63 57.0 4.13e-01 100.0% 72.1%
4529819 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.63 48.0 4.09e-01 88.5% 48.1%
2628866 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.62 54.0 3.83e-01 100.0% 73.2%
3284169 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.60 45.0 3.66e-01 76.9% 74.3%
3589216 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.60 47.0 3.25e-01 82.1% 36.3%
4037556 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.60 47.0 3.97e-01 87.2% 55.0%
5037934 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 47.0 3.18e-01 88.5% 21.5%
3387730 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.59 43.0 3.61e-01 76.9% 81.5%
336675 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.58 43.0 3.53e-01 76.9% 78.2%
4969387 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 45.0 2.94e-01 83.3% 19.4%
3693742 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.58 42.0 3.54e-01 75.6% 83.1%
4356793 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.58 42.0 3.64e-01 76.9% 88.8%
5013890 11.1.1.1443 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.58 41.0 3.50e-01 75.6% 70.0%
5037168 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.57 44.0 3.75e-01 82.1% 55.2%
3680278 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.57 42.0 3.32e-01 78.2% 74.8%
3817727 295.1.1.44 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29049 0.56 45.0 4.21e-01 85.9% 82.1%
3734800 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.56 48.0 2.99e-01 94.9% 20.7%
4973090 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.56 47.0 4.45e-01 98.7% 88.0%
4024578 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.56 48.0 3.93e-01 100.0% 71.6%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 43.0 2.87e-01 83.3% 31.1%
4970458 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.55 41.0 3.48e-01 79.5% 94.0%
3557455 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 43.0 2.91e-01 83.3% 33.9%
167636 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 39.0 3.31e-01 74.4% 92.5%
3876541 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.55 42.0 2.90e-01 83.3% 34.1%
3490926 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.55 40.0 3.44e-01 75.6% 83.3%
4017019 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 39.0 3.01e-01 75.6% 63.7%
5064236 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 47.0 4.23e-01 100.0% 77.4%
3451757 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 44.0 3.48e-01 100.0% 40.0%
3820523 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 43.0 4.55e-01 92.3% 98.6%
3994597 6165.1.1.1 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.54 46.0 3.30e-01 100.0% 86.2%
3698492 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 47.0 4.08e-01 100.0% 68.8%
3445028 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 44.0 4.45e-01 97.4% 93.8%
3279657 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.53 40.0 3.35e-01 80.8% 96.3%
3175652 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.48e-01 92.3% 71.5%
3229636 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.53 46.0 3.54e-01 100.0% 57.8%
4348187 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 42.0 4.16e-01 100.0% 83.5%
4025179 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 45.0 3.39e-01 100.0% 41.0%
4929184 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.29e-01 85.9% 81.9%
3234110 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 45.0 3.35e-01 96.2% 48.7%
3861759 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.52 37.0 3.45e-01 75.6% 90.0%
3993127 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.80e-01 100.0% 32.2%
3382839 7026.1.1.13 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.51 43.0 2.60e-01 100.0% 31.3%
3770163 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.41e-01 75.6% 87.0%
3573668 11.1.1.673 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.51 35.0 3.15e-01 71.8% 68.2%
3495172 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 41.0 3.38e-01 100.0% 45.5%
4020185 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 41.0 3.67e-01 94.9% 68.3%
3547225 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 43.0 2.74e-01 100.0% 42.2%