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NC_052972.1__YP_009997439.1__JT314_gp58__00058

Bact-Vir

NC_052972.1__YP_009997439.1__JT314_gp58__00058

Identity

Accession:
NC_052972 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Ruegeria_phage_vB_RpoS-V7

TaxID: 2218620

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-131
PDB
Domain cluster: rep: ON453901.1__WAK79567.1__X__00040__D22-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02924.20 best HDPD 47.5 2.60e-12 97.1% 84.5%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.88 78.0 8.08e-01 97.1% 98.9%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.85 74.0 7.74e-01 92.2% 98.9%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.57 41.0 4.61e-01 95.1% 98.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 25.0 3.24e-01 83.3% 75.0%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.55 36.0 3.86e-01 74.5% 79.1%
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.54 35.0 3.94e-01 73.5% 89.3%
1nrkA03 2.40.30.160 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 38.0 3.61e-01 77.5% 84.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.89 81.0 7.90e-01 100.0% 89.0%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.88 51.0 6.70e-01 87.3% 100.0%
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.86 77.0 7.82e-01 97.1% 96.0%
4215822 1.1.8.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.66 37.0 4.38e-01 89.2% 80.0%
4409090 1.1.8.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.65 37.0 4.29e-01 91.2% 77.3%
4242302 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.62 31.0 3.65e-01 82.4% 68.6%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 26.0 3.32e-01 83.3% 68.3%
3970319 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 37.0 3.93e-01 93.1% 71.1%
4072484 1.1.8.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.57 38.0 4.03e-01 74.5% 76.7%
4539652 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 35.0 3.61e-01 90.2% 66.0%
3739289 1.1.8.18 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.55 40.0 3.45e-01 78.4% 70.0%
4328611 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.53 35.0 3.76e-01 73.5% 76.7%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.51 35.0 4.00e-01 87.3% 100.0%