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NC_052975.1__YP_009997682.1__JT317_gp67__00067

Bact-Vir

NC_052975.1__YP_009997682.1__JT317_gp67__00067

Identity

Accession:
NC_052975 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 233-361
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cipA02 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.55 32.0 3.38e-01 97.7% 62.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033827 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.93 82.0 8.57e-01 93.8% 97.5%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.52 30.0 3.74e-01 82.2% 98.7%
D2 high residues 488-575
PDB
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947107 101.1.4.47 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1456 0.59 29.0 3.09e-01 72.7% 50.7%
2759971 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.52 35.0 3.53e-01 70.5% 71.4%
D3 high residues 827-935
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 39.0 4.74e-01 70.6% 91.4%
1fbqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.97e-01 72.5% 100.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 40.0 4.10e-01 71.6% 63.8%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 41.0 4.56e-01 72.5% 82.1%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.56e-01 71.6% 85.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 4.30e-01 72.5% 70.9%
3oovA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 48.0 4.18e-01 89.0% 93.3%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.58 39.0 4.39e-01 73.4% 95.0%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 35.0 3.14e-01 71.6% 42.8%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 4.46e-01 78.9% 94.5%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 45.0 3.94e-01 89.0% 85.9%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 45.0 3.98e-01 89.9% 90.9%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.55 37.0 4.11e-01 72.5% 89.4%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.54 37.0 3.82e-01 88.1% 71.0%
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 33.0 2.70e-01 72.5% 32.2%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 32.0 3.41e-01 71.6% 71.0%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 42.0 3.80e-01 89.9% 94.1%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 30.0 3.20e-01 98.2% 66.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3997569 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 49.0 6.01e-01 70.6% 91.4%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 44.0 3.64e-01 72.5% 37.3%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.69 43.0 3.62e-01 72.5% 37.3%
3989819 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.68 43.0 5.06e-01 72.5% 93.3%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.67 43.0 3.55e-01 72.5% 36.3%
None 0.67 42.0 3.54e-01 72.5% 37.3%
3394822 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.66 42.0 3.47e-01 72.5% 35.4%
5076520 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 42.0 4.42e-01 72.5% 70.0%
5062643 101.1.2.138 alpha arrays › HTH › HTH › winged helix domain › DUF3860 0.66 44.0 4.97e-01 71.6% 92.5%
4941839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 43.0 3.95e-01 72.5% 51.0%
3889562 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 4.55e-01 72.5% 90.9%
3412336 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 4.48e-01 71.6% 81.2%
5039038 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.64 43.0 4.87e-01 71.6% 93.8%
4983791 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.64 41.0 3.87e-01 72.5% 53.8%
5025840 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.54e-01 72.5% 77.0%
4478358 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.66e-01 74.3% 96.2%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 41.0 4.31e-01 71.6% 72.0%
3173225 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.61 40.0 3.80e-01 72.5% 54.8%
3202121 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.60 35.0 2.70e-01 71.6% 26.4%
3223233 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 55.0 4.28e-01 100.0% 86.1%
4069824 101.1.9.20 alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.60 36.0 4.03e-01 73.4% 76.5%
3739985 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.58 43.0 3.90e-01 79.8% 75.5%
3944435 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 33.0 3.93e-01 71.6% 85.3%
2724 101.1.2.138 alpha arrays › HTH › HTH › winged helix domain › DUF3860 0.55 41.0 4.46e-01 78.9% 94.5%
4616161 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.55 31.0 3.15e-01 87.2% 55.2%
3933222 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 38.0 3.45e-01 72.5% 60.0%
3368757 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 30.0 3.21e-01 87.2% 61.1%
3378225 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.53 29.0 3.26e-01 87.2% 68.2%
4515771 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 30.0 3.18e-01 78.9% 60.0%
3679423 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 28.0 3.36e-01 83.5% 76.0%
3345132 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.52 31.0 3.06e-01 86.2% 53.9%
4937637 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.51 40.0 3.15e-01 87.2% 79.6%
4958551 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.51 32.0 3.92e-01 77.1% 100.0%
3782500 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.50 41.0 3.53e-01 89.9% 82.2%
D4 medium residues 29-83_108-180
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031372 862.1.1.12 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 0.95 92.0 7.66e-01 100.0% 72.0%
D5 medium residues 84-107_181-214
PDB
Domain cluster: representative
D6 medium residues 365-378_398-434
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.74 54.0 4.08e-01 80.4% 54.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 53.0 5.06e-01 88.2% 91.9%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.66 38.0 3.44e-01 74.5% 42.0%
2vqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.64 53.0 3.78e-01 98.0% 52.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.64 48.0 4.71e-01 84.3% 91.2%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.64 54.0 4.64e-01 100.0% 93.0%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.63 51.0 4.44e-01 96.1% 87.2%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.61 54.0 3.98e-01 98.0% 69.3%
2kn6A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 49.0 4.35e-01 100.0% 74.4%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.59 45.0 3.29e-01 90.2% 36.9%
2q2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.43e-01 100.0% 40.6%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.55 40.0 3.73e-01 80.4% 71.0%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.53 45.0 3.37e-01 96.1% 39.1%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 38.0 3.62e-01 88.2% 64.2%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 39.0 3.59e-01 86.3% 90.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326571 633.12.1.19 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › PF26751, PF26752 0.77 67.0 4.53e-01 100.0% 34.7%
3768175 604.3.1.25 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF30537 0.68 55.0 5.10e-01 100.0% 70.8%
4009408 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.66 56.0 5.20e-01 100.0% 97.1%
3584199 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 55.0 3.23e-01 96.1% 21.2%
3977558 639.2.1.3 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.64 52.0 5.13e-01 94.1% 94.5%
4202679 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.62 50.0 3.66e-01 100.0% 91.2%
3986794 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.61 52.0 4.78e-01 100.0% 92.9%
3609997 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.59 49.0 3.23e-01 96.1% 26.6%
3882485 109.4.1.14 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 0.59 47.0 3.31e-01 98.0% 39.5%
3390791 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.58 50.0 3.43e-01 98.0% 45.0%
3602498 604.17.1.1 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.58 46.0 4.47e-01 92.2% 86.7%
4002640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 44.0 2.72e-01 90.2% 14.2%
4847390 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 41.0 3.46e-01 94.1% 86.2%
3228081 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 4.03e-01 98.0% 100.0%
D7 medium residues 435-487_576-593
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.67 46.0 3.33e-01 71.8% 74.1%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 39.0 4.36e-01 73.2% 77.2%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 43.0 4.28e-01 77.5% 69.9%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 42.0 4.12e-01 77.5% 66.7%
4c0aA02 1.10.1000.11 Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 0.61 42.0 3.53e-01 71.8% 75.4%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 39.0 3.17e-01 78.9% 35.1%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 38.0 2.75e-01 71.8% 91.4%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 38.0 2.41e-01 71.8% 20.0%
3d0wA00 1.10.760.20 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 0.54 38.0 3.62e-01 74.6% 62.8%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 33.0 2.79e-01 77.5% 36.7%
1wy9A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 37.0 3.27e-01 76.1% 96.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4984725 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.62 43.0 3.07e-01 73.2% 27.9%
4182885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 35.0 3.66e-01 77.5% 66.2%
4161178 2003.1.1.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.55 42.0 3.08e-01 81.7% 32.6%
4989896 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.52 37.0 2.47e-01 77.5% 31.9%
D8 medium residues 594-660_737-825
PDB
Domain cluster: representative
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253892 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.78 64.0 5.84e-01 84.6% 98.5%
5022020 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.72 66.0 5.48e-01 98.7% 85.7%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.70 66.0 5.35e-01 100.0% 80.3%
4931926 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 57.0 4.50e-01 90.4% 77.1%
4926889 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.51 36.0 3.21e-01 71.8% 97.7%
5025002 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.50 35.0 3.06e-01 70.5% 92.1%
None 0.50 37.0 3.00e-01 75.0% 80.4%
D9 medium residues 661-736
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 37.1 6.30e-09 100.0% 65.5%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svmA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 69.0 5.45e-01 100.0% 56.9%
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 65.0 4.74e-01 100.0% 36.6%
1amuA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 45.0 3.69e-01 100.0% 36.4%
1zq9A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 43.0 3.33e-01 100.0% 31.1%
3qldA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.61 46.0 3.32e-01 100.0% 26.8%
6bzrB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 54.0 3.86e-01 100.0% 49.4%
4akgA12 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 52.0 4.59e-01 100.0% 65.0%
2f00A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 40.0 3.87e-01 100.0% 60.2%
2i7gB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.60 51.0 3.39e-01 100.0% 33.3%
1lucA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.59 51.0 3.40e-01 100.0% 35.3%
2bo4A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 46.0 3.52e-01 100.0% 34.9%
6iubA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 3.54e-01 100.0% 84.1%
1hyeA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 3.83e-01 100.0% 46.3%
6fgcA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.58 51.0 3.92e-01 100.0% 72.4%
1lucB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.58 50.0 3.36e-01 100.0% 35.9%
2gdqA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.58 45.0 3.14e-01 100.0% 24.8%
4j1qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 3.14e-01 100.0% 35.7%
5z5cA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 41.0 3.69e-01 100.0% 53.7%
5kzkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.57 42.0 3.35e-01 97.4% 38.5%
2yfkA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.57 49.0 3.76e-01 100.0% 47.6%
4krgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 50.0 3.48e-01 100.0% 41.4%
3qtgA03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.56 38.0 3.40e-01 100.0% 47.8%
2oztA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.56 49.0 3.61e-01 100.0% 47.3%
4uuwA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.55 49.0 3.77e-01 100.0% 90.1%
4l9yD00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 47.0 3.30e-01 100.0% 58.9%
5buqA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 37.0 2.47e-01 100.0% 14.9%
2plcA00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 47.0 3.24e-01 100.0% 63.1%
4dg8A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 48.0 3.01e-01 100.0% 39.7%
3uwpA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.38e-01 100.0% 34.1%
5v8sA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 46.0 3.79e-01 100.0% 63.8%
7mjzA01 3.40.50.12160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylthiotransferase, N-terminal domain 0.53 46.0 4.02e-01 100.0% 68.0%
3clkB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 47.0 4.04e-01 100.0% 64.8%
5gizA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 47.0 3.97e-01 100.0% 71.3%
4lg1B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 46.0 3.36e-01 100.0% 49.3%
3p4gD00 2.160.20.160 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 36.0 2.47e-01 100.0% 17.6%
3lccA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.31e-01 100.0% 49.1%
4cujA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.83e-01 100.0% 57.9%
4pxyA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 44.0 3.14e-01 100.0% 36.5%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 3.77e-01 100.0% 64.8%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.50 44.0 3.10e-01 100.0% 32.7%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253892 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.85 77.0 5.53e-01 100.0% 37.4%
2810781 8001.1.1.1 alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.78 69.0 4.89e-01 100.0% 33.5%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.76 67.0 4.56e-01 100.0% 28.7%
5023501 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.75 68.0 4.61e-01 100.0% 34.2%
4812297 2004.1.1.55 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.72 60.0 4.53e-01 100.0% 37.5%
4931926 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 64.0 4.21e-01 100.0% 25.1%
5029061 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.71 52.0 4.31e-01 100.0% 45.4%
None 0.70 63.0 4.83e-01 100.0% 48.2%
None 0.70 63.0 4.91e-01 100.0% 51.2%
None 0.70 63.0 4.90e-01 100.0% 51.2%
5004060 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.69 52.0 4.25e-01 100.0% 44.4%
4134156 2004.1.1.125 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N 0.69 62.0 4.84e-01 100.0% 51.2%
None 0.69 62.0 4.67e-01 100.0% 45.6%
None 0.69 62.0 4.81e-01 100.0% 51.2%
5068766 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.69 51.0 4.08e-01 100.0% 39.4%
None 0.68 61.0 4.68e-01 100.0% 46.9%
None 0.68 61.0 4.56e-01 100.0% 43.2%
4069782 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 61.0 4.18e-01 100.0% 30.9%
4318504 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.68 60.0 4.67e-01 100.0% 57.6%
4025422 2004.1.1.296 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind 0.68 59.0 4.19e-01 100.0% 38.8%
4431149 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.67 44.0 3.63e-01 98.7% 37.0%
5072054 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.67 58.0 4.41e-01 100.0% 87.4%
4069364 2002.1.1.236 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.67 48.0 3.65e-01 100.0% 32.2%
4990761 247.1.1.53 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Beta-Casp 0.66 58.0 3.54e-01 100.0% 36.4%
4985671 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 58.0 3.99e-01 100.0% 29.3%
None 0.66 57.0 4.48e-01 100.0% 47.6%
3253623 2004.1.1.296 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind 0.65 57.0 4.23e-01 100.0% 46.8%
3816173 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.65 49.0 3.01e-01 100.0% 13.8%
4984062 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.65 53.0 4.23e-01 98.7% 45.3%
4542391 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 54.0 3.84e-01 100.0% 29.2%
4932834 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.63 55.0 4.08e-01 100.0% 80.5%
4948046 2004.1.1.1203 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RMMBL 0.63 55.0 4.17e-01 100.0% 87.9%
3329754 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.62 49.0 3.70e-01 86.8% 60.0%
3272236 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.62 52.0 3.95e-01 96.1% 87.7%
4890989 148.1.3.231 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_7 0.62 51.0 4.66e-01 90.8% 73.3%
4975660 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.62 53.0 3.29e-01 100.0% 34.7%
5051757 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.60 51.0 3.99e-01 100.0% 87.2%
5005357 7542.1.2.3 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › AcnX_2nd 0.59 43.0 4.12e-01 98.7% 66.7%
3472986 2004.1.1.296 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind 0.58 49.0 3.53e-01 97.4% 40.0%
3260169 2004.1.1.133 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHD3_GTPase 0.58 50.0 3.37e-01 100.0% 43.1%
5076103 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.58 42.0 3.11e-01 100.0% 26.5%
4132035 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.57 47.0 3.09e-01 98.7% 42.5%
4926930 2007.1.1.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.57 49.0 3.78e-01 100.0% 68.6%
None 0.57 50.0 3.36e-01 100.0% 48.7%
5077825 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.57 49.0 3.97e-01 100.0% 75.5%
5048984 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.56 48.0 3.86e-01 100.0% 47.1%
5039656 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.55 48.0 3.74e-01 100.0% 54.1%
4961995 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 47.0 3.11e-01 100.0% 22.4%
3265451 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 47.0 3.10e-01 100.0% 37.0%
4440590 7529.1.1.3 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.54 47.0 3.68e-01 100.0% 84.6%
3272042 2003.1.5.246 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12, KR 0.53 43.0 2.59e-01 90.8% 15.5%
2171779 2003.1.1.64 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Staph_opine_DH 0.53 45.0 3.67e-01 100.0% 50.3%
4625700 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.53 46.0 3.80e-01 100.0% 57.2%
3294524 2492.1.1.6 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin 0.53 44.0 2.90e-01 100.0% 61.0%
4042980 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.53 46.0 3.77e-01 100.0% 56.6%
4052441 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.53 38.0 2.47e-01 77.6% 37.9%
4342185 7529.1.1.3 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.52 44.0 3.55e-01 100.0% 83.5%
4194158 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.52 45.0 3.76e-01 100.0% 86.4%
3190020 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.52 44.0 3.40e-01 98.7% 39.5%
4396205 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.52 45.0 3.76e-01 100.0% 87.9%
5009806 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 44.0 3.34e-01 100.0% 41.0%
4671589 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.52 45.0 3.77e-01 100.0% 76.3%
3212938 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 44.0 3.07e-01 100.0% 43.2%
4382760 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.51 45.0 3.44e-01 100.0% 42.2%
4487278 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.51 43.0 3.23e-01 100.0% 47.3%
3893333 2004.1.1.495 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.51 45.0 3.37e-01 100.0% 44.6%
260095 2007.1.1.8 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › ThuA 0.51 44.0 3.13e-01 100.0% 36.3%
3398751 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.50 37.0 2.91e-01 80.3% 98.9%
3683253 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.50 43.0 2.93e-01 100.0% 26.2%