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NC_052976.1__YP_009997711.1__JT318_gp26__00026

Bact-Vir

NC_052976.1__YP_009997711.1__JT318_gp26__00026

Identity

Accession:
NC_052976 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Phobosvirus› Pseudomonas_phage_PspYZU01

TaxID: 1983555

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-98
PDB
Domain cluster: rep: MN536026.1__QIG56909.1__vBPaeSS2019XI_031__00031__D3-61
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24886.2 best DUF7740 50.4 2.80e-13 100.0% 92.4%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 55.0 5.53e-01 75.0% 83.9%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 59.0 4.99e-01 81.7% 70.1%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 55.0 5.05e-01 81.7% 60.3%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.73 55.0 4.46e-01 81.7% 80.9%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 55.0 4.55e-01 81.7% 48.1%
1zzpA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.71 62.0 5.13e-01 100.0% 86.2%
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.68 51.0 4.15e-01 80.0% 84.1%
1hx8A02 1.20.58.150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › ANTH domain 0.66 49.0 3.92e-01 78.3% 72.6%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 3.92e-01 80.0% 76.2%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.66 55.0 4.41e-01 100.0% 81.7%
1hy5B00 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.65 55.0 4.44e-01 96.7% 91.7%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 4.18e-01 81.7% 89.1%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.65 54.0 4.04e-01 100.0% 79.5%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.64 48.0 3.57e-01 81.7% 68.1%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.63 47.0 4.50e-01 83.3% 78.1%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.63 48.0 4.47e-01 85.0% 70.9%
1z6tA05 1.25.40.370 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 54.0 4.25e-01 100.0% 63.2%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 55.0 4.24e-01 100.0% 65.2%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 50.0 3.72e-01 86.7% 49.7%
4p3fA00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.63 55.0 3.87e-01 100.0% 90.2%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 3.97e-01 81.7% 91.1%
6xu2A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 45.0 2.64e-01 81.7% 9.4%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 44.0 3.70e-01 78.3% 48.6%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 50.0 4.73e-01 100.0% 91.0%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 46.0 3.58e-01 81.7% 46.7%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 43.0 4.30e-01 80.0% 93.7%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 50.0 4.15e-01 95.0% 59.1%
3mx3A01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 49.0 3.51e-01 96.7% 57.1%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.59 51.0 3.60e-01 100.0% 36.7%
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 43.0 3.51e-01 83.3% 42.3%
4eq5A01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.59 50.0 3.67e-01 100.0% 64.4%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.56 48.0 3.52e-01 98.3% 90.5%
1rktA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.22e-01 83.3% 89.4%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.50 43.0 3.14e-01 100.0% 36.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1503553 3796.1.1.1 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker 0.75 55.0 5.05e-01 81.7% 60.3%
3725161 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 56.0 4.51e-01 81.7% 61.7%
4946564 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 64.0 4.10e-01 98.3% 23.1%
4504543 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.73 54.0 3.23e-01 78.3% 12.2%
4216957 3796.1.1.0 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain 0.72 53.0 3.77e-01 81.7% 26.1%
2570089 601.2.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.72 62.0 6.32e-01 96.7% 98.3%
3605793 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.72 53.0 5.01e-01 81.7% 77.3%
3427197 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.71 52.0 4.64e-01 78.3% 58.8%
4992790 601.2.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.70 60.0 5.21e-01 98.3% 94.7%
3887313 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 53.0 4.31e-01 81.7% 80.0%
2035464 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.66 49.0 4.05e-01 80.0% 80.9%
3883533 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 52.0 3.30e-01 90.0% 17.3%
4995419 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.66 52.0 4.71e-01 90.0% 62.4%
3257558 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.66 56.0 5.19e-01 100.0% 82.5%
None — 0.65 55.0 4.45e-01 96.7% 92.5%
4129499 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.65 48.0 4.08e-01 100.0% 46.7%
3411823 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 54.0 4.93e-01 100.0% 77.6%
3218479 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.62 47.0 3.50e-01 83.3% 83.2%
3889216 509.1.1.3 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N 0.60 45.0 4.24e-01 81.7% 81.3%
3475327 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.60 52.0 4.77e-01 100.0% 88.7%
2628410 101.1.1.86 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Raf1_HTH 0.60 42.0 4.13e-01 75.0% 75.8%
4977785 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.59 51.0 3.69e-01 100.0% 88.3%
4957963 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.58 49.0 4.19e-01 96.7% 91.0%
4177727 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.58 49.0 4.05e-01 98.3% 52.7%
3217001 109.12.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › MAS20 0.54 40.0 3.63e-01 80.0% 58.8%