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NC_052988.1__YP_009998482.1__JT330_gp13__00013

Bact-Vir

NC_052988.1__YP_009998482.1__JT330_gp13__00013

Identity

Accession:
NC_052988 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Yonseivirus› Klebsiella_phage_KPN_U2874

TaxID: 2024241

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-81
PDB
Domain cluster: rep: AY357582.2__AAQ63374.1__Nazgul73__00072__D15-84
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 68.0 6.24e-01 100.0% 88.2%
3g7dA04 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 67.0 6.15e-01 100.0% 74.7%
1rzsA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 56.0 5.99e-01 93.0% 93.4%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 62.0 5.46e-01 97.2% 63.1%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 59.0 5.85e-01 91.5% 82.9%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 58.0 5.85e-01 100.0% 87.3%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 58.0 5.93e-01 100.0% 92.9%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 57.0 5.68e-01 100.0% 89.2%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 61.0 5.80e-01 100.0% 88.2%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 59.0 5.51e-01 100.0% 78.9%
1neqA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 53.0 5.31e-01 100.0% 93.2%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 46.0 4.81e-01 80.3% 90.8%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 49.0 4.80e-01 90.1% 84.2%
1ngkB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 44.0 3.70e-01 78.9% 86.6%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 51.0 4.95e-01 97.2% 100.0%
2wcjA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 45.0 3.64e-01 81.7% 80.1%
2k0nA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.59 45.0 4.23e-01 81.7% 80.0%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.58 48.0 3.04e-01 97.2% 78.9%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 42.0 4.14e-01 83.1% 83.7%
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.56 43.0 3.35e-01 84.5% 72.4%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.56 40.0 3.72e-01 76.1% 78.0%
2lwdA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 43.0 4.02e-01 90.1% 88.5%
4an8A02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 45.0 3.90e-01 97.2% 86.9%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.54 42.0 3.82e-01 84.5% 85.4%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 47.0 4.07e-01 100.0% 95.6%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.54 45.0 3.41e-01 100.0% 77.4%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.52 39.0 3.86e-01 83.1% 89.5%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.52 39.0 3.23e-01 81.7% 54.9%
1xmcB03 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 42.0 3.21e-01 91.5% 84.2%
1c00A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.41e-01 85.9% 50.5%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.50 36.0 3.56e-01 80.3% 89.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590480 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.77 61.0 5.39e-01 97.2% 59.0%
4530543 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 67.0 6.79e-01 100.0% 97.1%
1149503 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 59.0 5.85e-01 91.5% 82.9%
5028710 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 60.0 5.98e-01 97.2% 89.3%
1923620 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 62.0 5.91e-01 97.2% 84.1%
3278834 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 60.0 6.06e-01 100.0% 95.7%
4008375 101.1.4.21 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › P22_Cro 0.69 54.0 5.44e-01 94.4% 87.1%
3965598 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 57.0 5.82e-01 97.2% 95.7%
4955745 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 51.0 5.32e-01 90.1% 98.5%
5060652 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.61 46.0 4.74e-01 81.7% 93.8%
4981745 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.60 44.0 4.37e-01 80.3% 77.3%
3967094 873.1.1.7 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.59 51.0 3.74e-01 98.6% 70.0%
3290038 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.59 47.0 3.28e-01 88.7% 30.4%
5070000 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 43.0 4.44e-01 80.3% 93.8%
3672138 611.4.1.0 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.58 43.0 3.46e-01 81.7% 45.3%
4982157 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.58 49.0 4.66e-01 100.0% 91.1%
5069212 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 43.0 4.47e-01 81.7% 95.3%
4983596 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 42.0 4.36e-01 81.7% 92.3%
4954909 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 42.0 3.99e-01 81.7% 77.6%
352936 3813.1.1.1 ↗ alpha bundles › DUF416 › DUF416 › DUF416 › DUF416 0.54 45.0 3.41e-01 100.0% 77.4%
3183576 3985.1.1.1 ↗ alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM 0.53 45.0 4.37e-01 98.6% 95.0%
3195817 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.52 35.0 2.71e-01 100.0% 32.7%