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NC_053010.1__YP_009999910.1__JT352_gp45__00045

Bact-Vir

NC_053010.1__YP_009999910.1__JT352_gp45__00045

Identity

Accession:
NC_053010 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Redjacvirus› Providencia_phage_vB_PreS-Stilesk

TaxID: 2761110

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: rep: MW057859.1__QPB12471.1__X__00006__D2-68
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.89 69.0 7.62e-01 92.3% 100.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 66.0 7.28e-01 91.0% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 68.0 7.32e-01 96.2% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.89e-01 92.3% 100.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 64.0 6.99e-01 98.7% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 67.0 7.14e-01 98.7% 100.0%
6jqlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 56.0 4.26e-01 87.2% 86.0%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 4.21e-01 74.4% 86.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.54e-01 89.7% 95.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.42e-01 94.9% 93.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.64 38.0 4.57e-01 75.6% 95.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 5.53e-01 94.9% 100.0%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 44.0 3.95e-01 76.9% 90.9%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 3.94e-01 76.9% 72.7%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 3.93e-01 76.9% 89.1%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 44.0 4.36e-01 79.5% 85.2%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 47.0 4.74e-01 88.5% 94.9%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.97e-01 85.9% 88.1%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 48.0 4.37e-01 96.2% 82.7%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.81e-01 91.0% 92.4%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 47.0 2.93e-01 93.6% 25.9%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.60e-01 84.6% 90.3%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.91e-01 87.2% 67.9%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.54 46.0 4.02e-01 97.4% 97.6%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.54 45.0 3.56e-01 92.3% 51.8%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.54 40.0 4.00e-01 80.8% 80.7%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.54 47.0 4.14e-01 98.7% 78.6%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.73e-01 80.8% 79.7%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.60e-01 85.9% 83.8%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 46.0 3.39e-01 100.0% 57.0%
1ywmA01 2.60.500.10 Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain 0.53 42.0 3.97e-01 87.2% 92.9%
7rxpA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.53 32.0 3.52e-01 74.4% 78.0%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 42.0 2.94e-01 89.7% 47.2%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 44.0 4.21e-01 98.7% 94.7%
3d4gE03 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.52 39.0 3.63e-01 82.1% 94.1%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.12e-01 93.6% 68.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 41.0 2.91e-01 89.7% 44.6%
1z52A02 3.30.412.10 Alpha Beta › 2-Layer Sandwich › Proaerolysin; Chain A, domain 2 › Proaerolysin, chain A, domain 2 0.51 42.0 3.32e-01 92.3% 97.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 42.0 2.90e-01 92.3% 50.2%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.51 40.0 3.62e-01 88.5% 74.3%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 34.0 2.99e-01 71.8% 74.4%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 43.0 3.07e-01 100.0% 89.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 72.0 7.88e-01 92.3% 100.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 72.0 7.88e-01 94.9% 100.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 72.0 7.85e-01 94.9% 100.0%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 72.0 7.86e-01 94.9% 100.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.90 71.0 7.79e-01 94.9% 100.0%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.88 70.0 7.66e-01 94.9% 100.0%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 70.0 7.61e-01 94.9% 100.0%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.87 69.0 7.56e-01 94.9% 100.0%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.87 69.0 7.52e-01 94.9% 100.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.87 69.0 7.46e-01 92.3% 100.0%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 68.0 7.43e-01 94.9% 100.0%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 68.0 7.38e-01 94.9% 100.0%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 68.0 7.39e-01 94.9% 100.0%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.85 67.0 7.29e-01 94.9% 100.0%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.85 68.0 7.32e-01 96.2% 100.0%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 67.0 7.26e-01 94.9% 100.0%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.84 70.0 7.38e-01 98.7% 98.6%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.15e-01 93.6% 98.5%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.23e-01 94.9% 100.0%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.18e-01 94.9% 100.0%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.20e-01 94.9% 100.0%
2138090 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.13e-01 94.9% 100.0%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.16e-01 94.9% 100.0%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 66.0 7.17e-01 94.9% 100.0%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.83 69.0 7.29e-01 98.7% 98.6%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.83 66.0 7.12e-01 94.9% 100.0%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 68.0 6.93e-01 97.4% 90.7%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.83 65.0 7.01e-01 94.9% 100.0%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.82 67.0 6.64e-01 96.2% 83.7%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.82 65.0 7.01e-01 96.2% 100.0%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.81 63.0 6.87e-01 93.6% 100.0%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.80 63.0 6.77e-01 94.9% 100.0%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.80 63.0 6.77e-01 94.9% 100.0%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 62.0 6.72e-01 93.6% 100.0%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.75 57.0 6.17e-01 100.0% 96.9%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.67e-01 84.6% 85.7%
4963049 4.1.1.486 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7098 0.68 56.0 5.59e-01 89.7% 91.3%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.55e-01 96.2% 95.0%
4015826 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.14e-01 82.1% 78.6%
3796739 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 46.0 4.58e-01 73.1% 100.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.65 51.0 5.24e-01 88.5% 86.7%
3828614 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.65 56.0 4.96e-01 93.6% 85.5%
3907178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.20e-01 98.7% 96.2%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 48.0 5.21e-01 88.5% 96.9%
4026785 4.1.1.279 ↗ beta barrels › SH3 › SH3 › SH3 › IQ 0.63 48.0 4.29e-01 82.1% 66.4%
3701828 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.62 55.0 3.71e-01 100.0% 40.7%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 5.16e-01 84.6% 100.0%
3215393 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.61 54.0 4.37e-01 98.7% 69.3%
3258651 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 51.0 3.14e-01 91.0% 20.0%
3721700 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.09e-01 96.2% 69.4%
4948955 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 47.0 3.82e-01 87.2% 43.3%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 48.0 5.02e-01 87.2% 98.6%
3483566 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.27e-01 85.9% 73.3%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 4.00e-01 87.2% 80.8%
3852438 883.1.1.24 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF29321 0.58 48.0 3.64e-01 88.5% 57.8%
3271674 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.58 45.0 4.33e-01 84.6% 77.8%
5059218 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.98e-01 71.8% 93.8%
3221209 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 47.0 3.11e-01 91.0% 43.2%
3344144 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 40.0 3.97e-01 73.1% 85.7%
5037123 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.56 45.0 3.83e-01 87.2% 92.3%
3220105 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 46.0 3.10e-01 91.0% 40.0%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.55e-01 85.9% 98.6%
3532044 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.54 42.0 3.71e-01 84.6% 86.1%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.49e-01 88.5% 97.3%
5057186 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 4.49e-01 96.2% 98.9%
3564235 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 40.0 3.42e-01 80.8% 84.0%
3867704 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 42.0 2.89e-01 93.6% 47.7%
3699382 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.51 41.0 3.08e-01 93.6% 41.9%
4030398 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.51 39.0 4.17e-01 84.6% 100.0%
3914493 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 41.0 2.47e-01 91.0% 20.7%
3214116 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.43e-01 84.6% 87.5%
3195479 316.1.1.10 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap 0.50 38.0 2.68e-01 82.1% 63.0%
152109 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 41.0 2.88e-01 92.3% 50.4%