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NC_053015.1__YP_010000243.1__JT357_gp21__00021

Bact-Vir

NC_053015.1__YP_010000243.1__JT357_gp21__00021

Identity

Accession:
NC_053015 ↗
Kingdom:
phage

Quality

48.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Newforgelanevirus› Pectobacterium_phage_MA12

TaxID: 2686474

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 275-348
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 50.0 3.62e-01 83.8% 27.7%
1uh9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.69 51.0 4.08e-01 79.7% 83.9%
1wkrA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.67 50.0 3.86e-01 81.1% 85.3%
1smrA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.67 50.0 3.92e-01 79.7% 85.2%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.66 50.0 3.90e-01 81.1% 85.7%
7tbdB02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.66 50.0 3.84e-01 81.1% 82.2%
1yg9A03 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.65 49.0 4.23e-01 81.1% 96.6%
1bxoA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.65 49.0 3.88e-01 81.1% 73.7%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.64 38.0 3.34e-01 100.0% 37.7%
1am5A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 47.0 3.80e-01 81.1% 75.0%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 55.0 3.96e-01 100.0% 54.5%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 54.0 3.82e-01 100.0% 52.7%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 54.0 3.98e-01 100.0% 63.1%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.61 46.0 3.15e-01 83.8% 72.7%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 49.0 2.95e-01 100.0% 11.7%
1olzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.99e-01 75.7% 70.8%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 46.0 3.10e-01 85.1% 42.9%
1e94A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 49.0 3.83e-01 100.0% 64.9%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.34e-01 73.0% 45.0%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.55 48.0 3.98e-01 97.3% 75.2%
5is2A03 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 47.0 3.45e-01 100.0% 83.6%
2lrwA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 37.0 3.71e-01 79.7% 69.2%
3onhA01 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.53 40.0 3.55e-01 81.1% 65.8%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 42.0 2.73e-01 86.5% 81.0%
4upkA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.52 45.0 2.83e-01 100.0% 66.7%
2vqrA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.50 43.0 2.70e-01 100.0% 66.7%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 43.0 2.95e-01 100.0% 90.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1734768 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.70 50.0 5.51e-01 81.1% 94.8%
4281770 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.69 51.0 3.83e-01 79.7% 68.3%
3787053 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.66 59.0 4.78e-01 100.0% 95.7%
3805413 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.66 50.0 3.25e-01 81.1% 31.9%
3619310 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.64 48.0 3.06e-01 81.1% 31.5%
3336343 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.63 46.0 4.30e-01 78.4% 85.3%
3232940 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.63 47.0 3.05e-01 81.1% 31.4%
3242953 1.1.1.29 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, A1_Propeptide, TAXi_N 0.63 47.0 3.05e-01 81.1% 30.8%
3224564 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.63 47.0 3.02e-01 81.1% 30.8%
2543665 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.62 43.0 3.26e-01 71.6% 43.0%
3990656 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.62 46.0 3.09e-01 81.1% 35.6%
3302177 304.125.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.62 47.0 4.20e-01 83.8% 96.4%
2980416 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.61 53.0 3.83e-01 100.0% 52.9%
3491036 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.60 37.0 3.48e-01 94.6% 50.6%
4992167 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 52.0 3.18e-01 100.0% 33.8%
4534784 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.59 50.0 3.89e-01 100.0% 62.8%
3593380 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.58 49.0 3.80e-01 100.0% 62.6%
4023905 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.57 48.0 3.68e-01 100.0% 58.5%
5046029 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.57 37.0 2.72e-01 79.7% 24.5%
2140348 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.57 48.0 3.70e-01 100.0% 65.2%
4969440 7528.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.56 47.0 4.23e-01 93.2% 95.2%
4024428 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.56 42.0 2.91e-01 83.8% 71.9%
4985746 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.61e-01 81.1% 74.3%
3258524 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 40.0 2.89e-01 83.8% 57.9%
3217007 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.53 39.0 3.63e-01 79.7% 72.6%
346142 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 42.0 2.69e-01 86.5% 79.3%
4934652 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 44.0 2.90e-01 100.0% 58.9%
D2 medium residues 6-96
PDB
D3 medium residues 113-156
PDB