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NC_053173.1__YP_010001172.1__JZX81_gp35__00035
Bact-VirNC_053173.1__YP_010001172.1__JZX81_gp35__00035
Identity
- Accession:
- NC_053173 ↗
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Taxonomy
TaxID: 2599852
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-144
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 27.0 | 3.15e-01 | 72.0% | 59.6% |
| 7uzqK01 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.52 | 47.0 | 3.39e-01 | 100.0% | 36.9% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 38.0 | 3.44e-01 | 78.4% | 70.5% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 43.0 | 3.25e-01 | 92.8% | 57.9% |
| 7e4nA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 44.0 | 3.48e-01 | 100.0% | 63.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4825592 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.60 | 54.0 | 4.87e-01 | 100.0% | 84.9% |
| 4658840 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.53 | 42.0 | 3.69e-01 | 84.8% | 81.1% |
| 4787 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.52 | 39.0 | 3.76e-01 | 78.4% | 86.6% |
| 5045639 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.52 | 45.0 | 3.96e-01 | 100.0% | 98.5% |
| 3791024 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.51 | 44.0 | 3.20e-01 | 97.6% | 88.1% |
D2
high
residues 147-299
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 39.0 | 4.83e-01 | 80.4% | 84.4% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 38.0 | 4.80e-01 | 80.4% | 93.3% |
| 2gqqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.63 | 32.0 | 4.20e-01 | 82.4% | 88.2% |
| 3rrkA01 | 3.30.70.2170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 31.0 | 4.22e-01 | 80.4% | 98.6% |
| 7as8L01 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.60 | 33.0 | 3.81e-01 | 79.7% | 71.4% |
| 3u1kB04 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 28.0 | 3.89e-01 | 81.0% | 97.2% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.28e-01 | 81.7% | 94.2% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 36.0 | 4.11e-01 | 87.6% | 86.8% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 32.0 | 3.79e-01 | 81.0% | 89.3% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 31.0 | 3.90e-01 | 81.7% | 100.0% |
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.76e-01 | 81.0% | 89.3% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 38.0 | 4.11e-01 | 96.1% | 92.9% |
| 4itxA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 37.0 | 3.86e-01 | 88.2% | 84.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5071694 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 34.0 | 3.94e-01 | 80.4% | 72.7% |
| 3969520 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 35.0 | 4.46e-01 | 82.4% | 94.4% |
| 4959456 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.60 | 38.0 | 3.71e-01 | 95.4% | 57.1% |
| 3587271 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 4.08e-01 | 76.5% | 68.4% |
| 3174361 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.58 | 41.0 | 3.57e-01 | 90.2% | 46.2% |
| 3615178 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 51.0 | 4.83e-01 | 97.4% | 96.8% |
| 5028488 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 36.0 | 4.25e-01 | 87.6% | 94.3% |
| 3593297 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 36.0 | 4.13e-01 | 84.3% | 92.7% |
| 5027690 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 35.0 | 3.99e-01 | 88.9% | 90.9% |
| 987926 | 304.15.1.5 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › CDI_Immunity_Comp | 0.52 | 32.0 | 3.82e-01 | 81.0% | 92.0% |
| 4030686 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.51 | 40.0 | 3.64e-01 | 92.2% | 62.0% |
| 5031636 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.50 | 36.0 | 3.94e-01 | 86.9% | 93.3% |
| 3698276 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 32.0 | 3.59e-01 | 81.7% | 81.7% |
| 3955114 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.50 | 37.0 | 3.92e-01 | 86.9% | 87.4% |