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NC_053174.1__YP_010001283.1__JZX82_gp65__00065

Bact-Vir

NC_053174.1__YP_010001283.1__JZX82_gp65__00065

Identity

Accession:
NC_053174 ↗
Kingdom:
phage

Quality

61.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-81
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.75 64.0 4.27e-01 92.9% 30.7%
4p02B02 3.30.379.20 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › 0.70 41.0 3.12e-01 94.6% 26.2%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 57.0 4.12e-01 96.4% 54.9%
2azwA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 57.0 4.22e-01 100.0% 62.3%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 56.0 4.31e-01 100.0% 68.2%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 54.0 3.97e-01 100.0% 57.8%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 54.0 4.02e-01 98.2% 69.5%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 4.08e-01 96.4% 66.4%
1hztA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 52.0 3.85e-01 100.0% 62.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.52e-01 94.6% 69.4%
3f6aA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 50.0 3.70e-01 98.2% 68.0%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 52.0 3.63e-01 100.0% 61.7%
3edsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 47.0 3.74e-01 100.0% 64.7%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 49.0 3.57e-01 94.6% 63.5%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 48.0 3.70e-01 100.0% 63.7%
3cngC02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 46.0 3.53e-01 100.0% 59.4%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 50.0 3.44e-01 100.0% 55.6%
2yweA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 50.0 3.51e-01 100.0% 57.4%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.54 37.0 3.48e-01 100.0% 55.4%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.75e-01 98.2% 52.4%
2x8xX03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 46.0 4.08e-01 96.4% 95.2%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.68e-01 98.2% 52.9%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.53 39.0 3.03e-01 85.7% 81.0%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 44.0 3.47e-01 100.0% 58.9%
6jmgB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.26e-01 100.0% 58.4%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.69e-01 98.2% 69.0%
2jemA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 45.0 3.02e-01 100.0% 44.8%
1fs7A01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.51 41.0 2.72e-01 100.0% 46.3%
3t2lA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 2.88e-01 82.1% 65.8%
8a57D02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.05e-01 100.0% 57.1%
1ewiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 3.19e-01 100.0% 43.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600258 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.70 57.0 4.72e-01 100.0% 51.0%
4084495 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.69 61.0 4.96e-01 100.0% 53.3%
3365669 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.69 60.0 4.86e-01 100.0% 50.9%
3925978 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.68 57.0 4.14e-01 94.6% 77.6%
3716787 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 4.53e-01 100.0% 48.2%
3702749 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.66 56.0 4.50e-01 100.0% 48.2%
3987874 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.66 54.0 4.89e-01 94.6% 65.3%
5058482 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 58.0 4.29e-01 98.2% 64.3%
4937578 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 57.0 4.32e-01 100.0% 66.7%
3288269 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.63 56.0 4.16e-01 100.0% 62.9%
6238 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.62 54.0 3.97e-01 100.0% 57.8%
3508135 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.62 52.0 4.72e-01 100.0% 68.8%
3690510 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.61 50.0 4.17e-01 98.2% 52.7%
2330653 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.61 52.0 4.43e-01 98.2% 59.6%
3166475 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.60 51.0 4.34e-01 98.2% 95.8%
3714632 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 51.0 3.61e-01 100.0% 42.8%
4047115 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 47.0 4.09e-01 98.2% 55.0%
4137219 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 47.0 4.05e-01 96.4% 55.0%
3541515 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 40.0 3.14e-01 89.3% 33.3%
4277262 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 45.0 3.75e-01 96.4% 44.9%
4025203 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.58 52.0 3.91e-01 100.0% 46.3%
1291948 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.57 50.0 3.64e-01 100.0% 46.2%
3580573 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.57 50.0 3.62e-01 100.0% 46.1%
3699668 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.57 51.0 3.23e-01 100.0% 28.7%
4926970 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 49.0 3.59e-01 94.6% 62.5%
3496161 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.57 51.0 3.57e-01 100.0% 43.5%
3600935 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.57 50.0 3.67e-01 100.0% 50.0%
4569015 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.57 50.0 3.70e-01 100.0% 49.0%
3484810 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.57 50.0 3.71e-01 100.0% 52.4%
4245798 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.56 50.0 3.73e-01 100.0% 47.9%
4028419 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.56 50.0 3.48e-01 100.0% 32.2%
3511989 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.56 49.0 3.76e-01 100.0% 56.3%
3714786 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 50.0 3.41e-01 100.0% 50.5%
4104133 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.56 49.0 3.42e-01 100.0% 38.9%
2700715 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.56 49.0 3.67e-01 100.0% 51.7%
3995685 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 47.0 3.89e-01 100.0% 50.5%
4680392 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 43.0 3.66e-01 98.2% 48.2%
3025136 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.55 42.0 3.15e-01 87.5% 80.0%
3375524 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.54 43.0 3.56e-01 98.2% 45.0%
4047327 221.4.1.6 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX-like 0.54 45.0 3.77e-01 100.0% 53.0%
3588379 375.1.1.90 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.54 42.0 4.04e-01 94.6% 75.4%
4020460 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 48.0 2.98e-01 100.0% 46.8%
5045317 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 47.0 3.28e-01 100.0% 38.3%
3758518 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 46.0 3.16e-01 96.4% 36.8%
3675288 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 38.0 2.54e-01 83.9% 82.3%
3282801 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 45.0 3.36e-01 100.0% 61.3%
5049557 7558.1.1.1 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase 0.52 42.0 2.98e-01 96.4% 73.2%
3926198 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 46.0 3.00e-01 100.0% 42.4%
3596043 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 43.0 3.18e-01 100.0% 66.5%
3692168 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 2.61e-01 100.0% 36.9%
4583759 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.52 36.0 2.41e-01 80.4% 68.6%
3640795 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 44.0 2.98e-01 98.2% 36.3%
4012767 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 46.0 2.80e-01 100.0% 33.6%
3784046 59.1.2.1 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.51 45.0 3.38e-01 98.2% 97.8%
4327607 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 42.0 3.06e-01 100.0% 54.4%
3249053 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 44.0 3.01e-01 100.0% 37.6%
4032675 325.1.7.52 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25997 0.51 39.0 3.46e-01 82.1% 62.5%
3706651 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 45.0 3.03e-01 100.0% 37.6%
3701641 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 36.0 2.37e-01 78.6% 86.9%
3599732 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.50 38.0 2.53e-01 82.1% 64.1%
4136329 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 40.0 3.04e-01 98.2% 54.7%
D2 medium residues 102-132
PDB